Gene detail

Gene detail information of Glyur000140s00011472.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19860.1	1.00E-27	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	XP_006574681.1	0	PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1 [Glycine max]
Swissprot	tr\|Q94C33\|C3H45_ARATH	4.00E-53	Zinc finger CCCH domain-containing protein 45
trEMBL	tr\|K7K6H9\|K7K6H9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G05580.2}

Sequence

Transcript Sequence

>Glyur000140s00011472.1
ATGAAGCGTGCAAGGAAATCAAACAGGGTTTCGTGGGCTCCTGGACCTAAACTGTGTCAGGTAAAATTGTTCTTATCTGAGGATTATCCTTCAAAAGTTGGCCTGAAATCTCAAGACCATCTTCAAGCAAAGACATTGTCAATGTTGCCTTCAAGTGGTAATGAATGTGAGGATTTACCACCTGGGTTTGAAGACAATCATTTCCTTAACCAATCAAAGGCTGAACTCTCTCACATTTCTCGGATCAAATGGGAATGCCCTCCTCTGATTGCTTTCAGTGATGACTGGTGCGTTGCAGCCGGTGAAGAGAGTAGGGAGAAAGATTATCAGAAGCTAAGAGAAACGAGAGTGCTTGAAGCAGTTTATCCTCGTCTTTCTTCCATTCCTCCTAGCCCATCTGTTTCTTTGGAGGTAAAGGAGGAAGATTATGATGATAACCTCACTGCTGTCATCCCTATCATTCCCATTGAGGAAGAGGAATCCATGGATGTTAAGCCTCAAGTTGCAGTCACAAAACCTGTGGAGACTCCCACCATTTTGAAGTCACAAAACTTGCCACAATATAAACCAGCAGCAACATCACAATGCAAATCCTCCTCTTCTTCTGTTCTCTCATCTGCACTTGGAAAGCCTGTACCTGTGGTATCTCCTTGTTTGGAGGCAGATTTAGCTGCAGCTTCTGCCGTCGTAGAAGCCATCATGAAAAGTAATGAGCAAGGAAGCATGATTGATACTGATCTACTCCTTAAAATATTCAATGACCCAACGATTATTGGGAAATTGATTAACCAACATGGAACTGCAGCCNCCACCACTACTGTTAGTGTATCCTCAAATACTTTAGGCAAACCCACTTCTGAATTGAAACCTGTTATTAGTTCATCAGNTCCATTGTCTAAACCTACACCTAAGGTGACAGCTTATGGAAGAACTACACCCACAACTGCAGTGAGTTTAGTACCTGCTTCTGGGCCAAAGCAAGCAACTCCAACACAGTCATTGTTGACCCCCACACCTGATAAGCCAGTAACTTCATCTGTTTCAGTGTTGACGTCTACTTTTGATAAGCCATCAACTCCTTCAGTTCCTTTGTTTAGGCCTGTATCTGTTTCACTGCCTCCACCTCCACCTCCACCTTCATATACACCTGTGCCCCATATGTCAAATGGAGTGCTGCNCAATTTTAATACACTTCCAACTCAACAAGATACAGTTTTGTCATCTGGGTTTAAGCGACCAGCATCATTGGCTTTTGTTTCCTCCAGTGAAATGAGNACAGTGGCATCACCTTCTGCTTCTGGGAACTTGCATGCAGTTACAAACCAGGTGAGATCCAATGCCAGCACAGTGCCTTATCAACAAGGTACTGGTACAGCATCTGCTGTGAAGGATGCCAACTATTATAAGAACCTCATTAGGCAACACGGTTCAGATAAGCAAAATATGCAGGACTCACAAATAGGCATCGGTCATAATAATTTCCAAGATTTGAAATCGGTACATAACATCACTAATCCCGGGGAAGTGATATTCAAAACTCAGAAACCTTGCATATACTTTAAAAGTTCAAGAGGGTGCAGGAATGGTTCTAATTGCCCTTATCAGCATGATATGTCAGTTCAGTTTGGAGCTGGTAATGTCCTAGGGGCCCCAAATGCAAAAAGAGTGAAACTAGGAGCAGAAATTAAGGGATGGATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00140	177681	183514	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.573
SRR1783600	control	5.716
SRR1783602	moderate drought stress	3.863
SRR1811619	moderate drought stress	3.794

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.521
DRR006520	Root Summer glycyrrhizin high producing strain	2.594
DRR006521	Root Winter glycyrrhizin high producing strain	0.846
DRR006522	Root Winter glycyrrhizin high producing strain	0.896
DRR006523	Root Summer glycyrrhizin low producing strain	16.640
DRR006524	Root Summer glycyrrhizin low producing strain	16.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.544
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.507

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.580
SRR2868004	Drought Stress (root)	4.326
SRR2967015	Control (root)	2.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.116
SRR9715740	Leaf	0.335
SRR9715741	Leaf	0.513
SRR9715739	Root	0.809
SRR9715742	Root	4.359
SRR9715743	Root	4.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.638
SRR8749028	MeJA induced 9h	83.110
SRR8749029	MeJA induced 9h	89.180
SRR8749030	Uninduced	88.186
SRR8749031	Uninduced	109.665
SRR8749032	Uninduced	73.672

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.645
SRR8400027	Control - Root	2.113