Gene detail

Gene detail information of Glyur000140s00011468

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18050.1	3.00E-29	histone H1-3
NR	AFK34182.1	2.95E-64	unknown [Lotus japonicus]
Swissprot	tr\|P40267\|H1_SOLPN	2.00E-54	Histone H1
trEMBL	tr\|I3S1P0\|I3S1P0_LOTJA	1.00E-64	Uncharacterized protein {ECO:0000313\|EMBL:AFK34182.1}

Sequence

Transcript Sequence

>Glyur000140s00011468.1
GCCACCTAACTACTTATTCAAAAGAATCAAAACTGCTTGTTCCACAATTGTTTTTAGGATTAGGATGTGGACAACAATACCATGACATTGGAAAAACGTGGTTGTGTTTGTTGATTTTGTTTGGGGTGCTAAATGGCCATCGTTTTCCCTGATTTAACCCACATTGTAATCANCTCTCTCTTGGCATCAATCCTCGGAAAAAATCAGGTGAAAAGGGAAGCATGTTAGAACAAAAATTGACGAATTCAATCGGCAAGAAAACACAGTCGTGCTTTTCCCCATTTAAGCCGACCTTGTGACAGAAACAAAGCAAATAGCAACAGTTGGCATTCCAATCCACAGCCAGAGCCACATCACCGCATGTTCTTCACTAGCCGCAAACAACGCTGATACTCGCGCCACGTGTGCGTTCTAGATCTCTCTTTGACACGNTGGCAATCCTCATGCCACTCGCTCCACCAATAGCACCCAACGATATTTCCAGCACAGATTCTTTCCCTCGCTATTTATAACACCAACGGTTCATCAGGTTCGGTGATCATCACAACCCACAGTTTCAGCTAACAAAACGTTTCGTCGCTAATTGCTATAGTCACTAGTCACTGAATAGGAGTGATCGGAGATGTCTGCCGCCGTAGAAGGTGATGCTCCCGCAGTGGAACANCCGGTGGAGGAGGTGAAAGCGCCGGAGGAGCCCAAGCCCGTGAAGGAGAAGAAGCCAAAGGCTCCAAAAGAGAAAANGCCCAAACAGGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAAGCGTTGTTGGCTCTGAATGAGAAAGGTGGTTCAAGCCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGTCGGTACTCCCTGCGAATTTCAAGAAGATTCTGGGCCTGCAACTGAAGAACCAGGCTGCGAGAGGGAAGCTGGTGAAGATCAAGGCATCATATAAGCTATCTGAAGCTGCGAAGGAGGAGAAAAACGACGCCGCATCGAAGAAAGGGAAGAAGGACGTCCCCACCGCCAGGGCCACGAGGGCTAACGCGGATAAGCAGAAACAGCGCCCGAAACGAAGCAGAGCCGTAACGGCCACTGCTCCGAAGAGCAAGAAAAACGAGTCGGTTAAGAAGAAGACGAGGAAGGTTTCCACGCTTTCGAAGCACAAACAGCCCAAGTCCATTAAGTCTCCTTCTAAGAGGGCTAGAAAAGCTACTGCTGCTACTGCATGAGAGATATTGATCATGAATGATAGTTCTCGTGTGTTTATCTAAACTCCGTTGTGTATATATCTGTGAATATGAAAGCTACTATCCTTTTATTCTCCCCTTTGCTCTTGTCACACTTGTTTAGACCAGTGTGATGTAGCGTTCGTTGTAATATCAAATCAAGTGAAGTTGATCTTTTTGATGCATCTTTTTGCTGTAATTTGTGTTTTTGTTCGTGAATTTTCTGTCTGTTACAGTAGAATGTTTTTTGTGGGCATTATAACCCGTTTGTGGCTGTTGAGTTGCGCACTAAACTAGGCTTTTGCCAGCGTTACGTGGTGGTGGTGGAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00140	152142	153814	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000140s00011468.1	PF00538.14	Linker_histone	48	118	7.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	213.108
SRR1783600	control	212.737
SRR1783602	moderate drought stress	426.279
SRR1811619	moderate drought stress	416.992

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	265.602
DRR006520	Root Summer glycyrrhizin high producing strain	262.640
DRR006521	Root Winter glycyrrhizin high producing strain	388.814
DRR006522	Root Winter glycyrrhizin high producing strain	376.270
DRR006523	Root Summer glycyrrhizin low producing strain	585.098
DRR006524	Root Summer glycyrrhizin low producing strain	582.979
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.814
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	200.717
SRR2868004	Drought Stress (root)	302.540
SRR2967015	Control (root)	379.583

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	65.540
SRR9715740	Leaf	68.375
SRR9715741	Leaf	144.865
SRR9715739	Root	324.208
SRR9715742	Root	237.252
SRR9715743	Root	240.740

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.382
SRR8749028	MeJA induced 9h	163.619
SRR8749029	MeJA induced 9h	83.093
SRR8749030	Uninduced	27.891
SRR8749031	Uninduced	21.626
SRR8749032	Uninduced	39.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	342.182
SRR8400027	Control - Root	291.491