Gene detail

Gene detail information of Glyur000140s00011442

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G16460.1	1.00E-95	Protein of unknown function (DUF1640)
NR	XP_003612111.1	2.74E-137	Coiled-coil domain-containing protein 90B [Medicago truncatula]
trEMBL	tr\|G7KGC7\|G7KGC7_MEDTR	1.00E-137	FMP32-like protein {ECO:0000313\|EMBL:AES95069.1}

Sequence

Transcript Sequence

>Glyur000140s00011442.1
CAAGTACAAGGTTACAGATCTCAGCCATTGATTATAATATGAATTTATCAATGGCTCATAGATTCTCAAGACCCCACTTCACCACTGTGGTGAAGTTTTATCACTTCACCACCAGAAACGCCACCCTAAAACAATTCCTCCCACTAACAGGCCTTCCTCCTTTTTTTTTGGGGACCAAACCGAAGCAATCGTGTCCTAGTTGAATCACGAGTATCTCTTTTTTGATTTTGATTAAAAAATACTGTAGGAGGAACCAGGAAGCAACCGCGAATTCCCTTTTCTCCATTCCATTCCCACTCCCACCAAATACCNCCTTTCTCCCCTTCATCCGCATTTCATGATCCATCATTAACAATGATATCCTCATCATCATATTTAGATTTACAGAATTGTTGCTGCTAAGGTTTTTGTGGCCGATTTGGAATTGGTGGTGGAATTTCGGTCTTGAAAGCTTTTTTTTTTTTTGTTTATTTGGAATCTAATGGCCGCGGTGGCGGCTTGCAAGCGAGTGGGGCTATTGGGGACCAATTCGGCAATTGCCTTAACTCGATTTGGAGGCTATTNTGGGGCTTCGAAATCGTTCCCTCCCATTTCGAGCTTTAGGCACTTCTCTCATCTGGTGAAATCAAACGGACAACGGTTGTTTCTCGTTGACACATTAGCCCTTGTTAGGAGACTTGAGGGGCAAGGAGTGCCCTCAAAGCAAGCTGAGGCGATAACTGCTGCCATAACTGAGGTGTTGAATGACAGCCTGGAGAATGTATCTCAGTCATTGGTCTCAAAAGTAGAGATGCAGAGGACTGAGATGCTGCAAGATGCCAACCTGTCCAAATTCAAAGCAGAAGTGCAGAGCTCACAGGGACACCACTTTTCTCTGCTGCAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGCAGTGAATTGAGATATGAGATAGATAAAGTCACTGCTGGGCAGCGGTTGGATTTGAACCTTGAAAAGGGGAGGATAAGGGAGGAACTGTCCAATCAGAATTCTGAAACTAACAACCTGACTAACAAACTTGATAGAGAGATCCATGCTTTAAGGGCACAGCTGGAAGCAGCCAAATATGATGTGATAAAATACTGCATAGGAACCCTTGTTTCAATATCAGCTGTTGGCCTTGCTGTTCTTCGTATCTTGATGTAAACAGTATTCAGATTAACACCGACAAATTTGAGCTGGGAAAAACTCGAGTAGCTGTTTGGAAGATGTTGTATGTTCTGTAAGAGAAACAATTGCATTGCAGTGCTGGTGGAGCTGAAGTAGTTTCCATTAGACACCAAATGGGCTTTCTTTTTTTAAAAAGTCCTATTCTTTCCATATTCTTTTGTTCATTTACTTGTCATTGCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00140	24406	27627	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000140s00011442.1	PF07798.6	DUF1640	56	232	1.30E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.074
SRR1783600	control	5.092
SRR1783602	moderate drought stress	4.712
SRR1811619	moderate drought stress	4.896

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.892
DRR006520	Root Summer glycyrrhizin high producing strain	11.976
DRR006521	Root Winter glycyrrhizin high producing strain	4.036
DRR006522	Root Winter glycyrrhizin high producing strain	3.521
DRR006523	Root Summer glycyrrhizin low producing strain	17.143
DRR006524	Root Summer glycyrrhizin low producing strain	17.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.557
SRR2868004	Drought Stress (root)	28.226
SRR2967015	Control (root)	28.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.215
SRR9715740	Leaf	14.450
SRR9715741	Leaf	18.806
SRR9715739	Root	4.485
SRR9715742	Root	10.848
SRR9715743	Root	8.649

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.805
SRR8749028	MeJA induced 9h	7.061
SRR8749029	MeJA induced 9h	6.466
SRR8749030	Uninduced	12.946
SRR8749031	Uninduced	14.807
SRR8749032	Uninduced	7.663

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.052
SRR8400027	Control - Root	18.841