Gene detail

Gene detail information of Glyur000139s00009295

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50900.1	4.00E-155	ARM repeat superfamily protein
NR	XP_003602759.1	0	hypothetical protein MTR_3g098730 [Medicago truncatula]
trEMBL	tr\|G7J3A9\|G7J3A9_MEDTR	0	Armadillo/beta-catenin repeat protein {ECO:0000313\|EMBL:AES73010.1}

Sequence

Transcript Sequence

>Glyur000139s00009295.1
ATGAAGCCGAAGGAATCAGCAGCGGAAGCAGACCCGATCAGCGTGTGCCTCCACGTCCTTAGTTCACTCCTCGACGACGAAATCCCCACCGTCCACCACTTAAAAGGCAAGTGGTCCATTGCCGGAGTCAAACTCACCCACCTCCAAACCCACCTCGCCGACTTCTCCTCCGAGCACCCCAAATCCTCCACCTCCAACCCCCTCTCACTCGACCTCCTCCANTCCATCTCCCACACCCTCCACGACGCCGTTTCCCTCGCCCGACAGTGCCAGTCCCACTCCCCCGACCTGCCACGTGGCAAGCTCCACACCCAGAGCCACCTCGACTCCCTCCTCGCCACCCTCGACCGCCACGTCACCGACTGCGACATCCTCCTCCGCAGCGGCGTCCTCTCCACCCTCGACTCCGCCCCCGCCACCAACAACCCCTCCAAGAGAGAGGCCGTTAGATCCCAATCCAGAAACCTCATCGCCCGATTGCAAATCGGGTCGCCCGAGTCCAGAGCCTCCGCGATGGACTCCCTCCTCTCCCTCCTCCACGAGGACGACAAGAACGTCACCATCGCCGTGGCACAGGGTGCGGTTCCAGTCCTCGTCCGCATGCTCGATTCCTCACCGGAGATGAAGGAGAAGACCGTCGCCGCTATCTCCAGAGTCTCCACGGTGGACAGCGGCAAGAACGTGCTCCTCGCGGAGGGGCTTCTTCTTCTCAACCACCTCCTCAGGGTTCTGGACTCCGGGAGTGGGTTCTCTATAGAGAAAGCCTGCATCGCTCTTCAGGCGCTGAGTTTCACCAGGGACAACGCCAGGGCTATTGGTTCCAGAGGTGGAATCTCGTCGCTGCTTGGGATCTGCCAGGCTGGCACACCCGGTTCACAGGCATCNGCTGCAGCGGTTCTGCGGAATCTTGCCAGATTCGCCGAAATAAAAGAGAATTTCGTGGAGGAGAATGCGCTTGNTGTTCTATTGGGTGTGGCTTCTTCTGGAACTTTACTGGCAAGGGAAAACGCGATTGGATGTGTCGCTAATTTGATTTCGGAGGACGAGAGTCTTAGGGTTTCGGTTGTTAAGGAAGGCGGCGTGGAGTGTGTGAAGAATTTCTGGGACTCGGCTCCACAATTTCAAAACCTCGAGGTTGCGGTTGAGGTTTTGAGGCATTTAGCTTCGAGTGGCCCCATTGCTGAGGTTCTGGTTTCGGAAGGGTTTGTTATGAGGGTGATTGGGGTGCTGAATTGTGACGTTCTGGCGGTTAGAATTGCGGCGGCGAGAGCCGTTTATTCATTGGGGTTAAATAGCAGCAAGACGAGAAAGGAAATGGGGGAGTGCGGGTGCGTTCAACCTCTGATTAAGATGTTGGATGGGAAGGGTGTGGAAGAGAAAGAATCTGCTGCGATGGCATTGTCGGTGCTGTTGCTACACCCCGGGAACAGGAGCATTTTCCGCAAGGACGAGAGGGGGATAGTGAGTGCCGTTCACCTGTTGAACCCTTCTCTGCACAACCTGGATAAGAAGTACCCTGTTTCGTTGCTCGTCTCGCTCTTGNATTCCAAGACCTGTAGGAAGCAGATGGTGGCGGCGGGGGCTTGTGTACATACGCAGAAGCTCGTTGAGATGGATGTCCCCGGGTCTAAGAAACTCTCGGATAGCCTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	251952	253640	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.051
SRR1783600	control	20.359
SRR1783602	moderate drought stress	25.276
SRR1811619	moderate drought stress	25.113

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.336
DRR006520	Root Summer glycyrrhizin high producing strain	21.646
DRR006521	Root Winter glycyrrhizin high producing strain	12.329
DRR006522	Root Winter glycyrrhizin high producing strain	11.606
DRR006523	Root Summer glycyrrhizin low producing strain	47.863
DRR006524	Root Summer glycyrrhizin low producing strain	48.471
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.793
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.489
SRR2868004	Drought Stress (root)	44.033
SRR2967015	Control (root)	52.319

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	128.413
SRR9715740	Leaf	64.109
SRR9715741	Leaf	87.607
SRR9715739	Root	147.733
SRR9715742	Root	159.494
SRR9715743	Root	150.477

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.431
SRR8749028	MeJA induced 9h	26.431
SRR8749029	MeJA induced 9h	17.043
SRR8749030	Uninduced	18.527
SRR8749031	Uninduced	1.832
SRR8749032	Uninduced	4.260

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.634
SRR8400027	Control - Root	38.955