Gene detail

Gene detail information of Glyur000139s00009290

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23690.1	4.00E-151	Polynucleotide adenylyltransferase family protein
NR	XP_004501740.1	0	PREDICTED: CCA-adding enzyme-like [Cicer arietinum]
COG	YP_006286020.1	2.00E-41	polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
trEMBL	tr\|A0A072VBZ4\|A0A072VBZ4_MEDTR	0	tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313\|EMBL:KEH35695.1}

Sequence

Transcript Sequence

>Glyur000139s00009290.1
ATGGCGTTCGCTGGCTTAAAACTCGTGCGCCAACCCACTCTTCATCTCCATCCCACTCCATTCCAATGTGTTCGCAAGGTTATGCCGAGATCTGTCGCTGCGGTTGAGGCAGAGGCATTGGCAAACGGAAAAGGTAGCGACTCGATTCGAAGCCCCCCCGCATGGAAGAGGGTAGATTCCAAAGAGCTTGGAATTCATAATTCAATGATTGGAATCAGTACGAGAAAGGTTCTTAACGGGCTCAAAAAAAGGGGATATGATGTATACCTTGCAGGAGGTTGCGTACGGGATCTTATTCTAAAGAAAACACCAAAGGACTTTGATATTATAACTTCGGCTGAGCTAAAAGAGGTGATGAAAATATTTTCATGGTGTGAGATANTTGGTAAACGTTTCCCTATATGTCATGTTCACATTGATGATACCATTGTTGAGGTCTCAAGTTTTAATACTGCTAGATGCAAGATGGGTACGGAATTCTCTCATCATACAAAAGCACCTAATGGTTGTGATGAGAAGGACCTTCTTCGGTGGATGAATTGTTTAAACCGGGACTTTACAATTAATGGGTTGATGCTTGATCCATATGCAAGAATTGTATATGATTACATGGGAGGAATAGAAGACATTAGAAAAGCTAAAGTACAAACGATAATTCCTGCAGATACTTCATTTCAGGAAGATTGTGCTCGCATTCTACGTGCAATTAGAATTGCTGCTCGCTTGGGGTTTAGTATTTCAAGAGAAACTGCTCATTCCATTAAAAATCTTTCATATTCAGTTTTAAGACTCGATAAGGGTAGGCTCCTGATGGAAATAAATTATATGCTAGCTTATGGTTCTGGTGAAGCTTCTTTGAGGCTACTATGGAAATTTGGACTGCTAGATATACTTCTTCCCTTTCAGGCTGCTTATTTTGCTCACCATGGATTTCNAAGGCGAGACAAAAGAAGCAATATGCTTTTGTCTCTGTTCTCCAATCTGGATAAACTTTTGGCTCCTAATCGTCCATGTCATAGTAGCTTATGGGTTGGGATCCTAGCATTACATAAAACATTGAGTGATCAACCAAGGGACCCCTTGGTGGTTGCTGCATTTAGCCTTGCAGTCCATAATGGTTTGGATGCAGAGGCATTGGAAGCTGAGGTTCGGGGTCTTGCAGAGTCTGTTAGAGGGTCACTGTTGCAAATGACTGATGAGCATTTTGTATCTCAGGCCATGGCTGACTATCCTCAAGCCCCTCATTCAGATCTAGTATTCATCACATTAGAATTGTACATAAAAGCATTCAGCATTTTCGAATGTGTGAAAAGGATTGCTGATAGGCAATTTGTGTCCAGGCAAGGCATAAAAATTGATTATGAGTCCTTAGCTCATGGTAATCTACAAGAAATACGNCATGTTTTTGCAAGGATTGTATTTNATACCGTTTTCCCACTTCACCAAGATCAAGATCAGCCATTGAAGNGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	206814	212008	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009290.1	PF01743.15	PolyA_pol	88	215	7.70E-23
Glyur000139s00009290.1	PF12627.2	PolyA_pol_RNAbd	243	304	7.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.244
SRR1783600	control	4.190
SRR1783602	moderate drought stress	5.467
SRR1811619	moderate drought stress	5.539

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.779
DRR006520	Root Summer glycyrrhizin high producing strain	2.658
DRR006521	Root Winter glycyrrhizin high producing strain	1.770
DRR006522	Root Winter glycyrrhizin high producing strain	1.614
DRR006523	Root Summer glycyrrhizin low producing strain	3.113
DRR006524	Root Summer glycyrrhizin low producing strain	3.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.737
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.998
SRR2868004	Drought Stress (root)	6.524
SRR2967015	Control (root)	6.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.110
SRR9715740	Leaf	4.727
SRR9715741	Leaf	4.495
SRR9715739	Root	0.365
SRR9715742	Root	1.292
SRR9715743	Root	0.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.664
SRR8749028	MeJA induced 9h	3.483
SRR8749029	MeJA induced 9h	1.603
SRR8749030	Uninduced	1.276
SRR8749031	Uninduced	0.463
SRR8749032	Uninduced	0.382

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.155
SRR8400027	Control - Root	4.826