Gene detail

Gene detail information of Glyur000139s00009288

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28110.2	9.00E-122	serine carboxypeptidase-like 45
NR	XP_006584695.1	0	PREDICTED: serine carboxypeptidase-like 45-like isoform X2 [Glycine max]
COG	YP_002430787.1	2.00E-16	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q93Y09\|SCP45_ARATH	4.00E-149	Serine carboxypeptidase-like 45 (Precursor)
trEMBL	tr\|K7L4B3\|K7L4B3_SOYBN	0	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}

Sequence

Transcript Sequence

>Glyur000139s00009288.1
ATGAACTTGNCAACATGGAAGTCCAAGTCCAAATCCAAGACCATGGCAATGGCTCTGGTGTTGCTTCTGCTTCATTTGAGTTTTCCATTGGAGGTGTTTTGTTTCTCTTCTTCTTCTCATGCAGATAGAATTGTTGGCCTTCCTGGGCAACCCCACAACATTGGCTTTCAACAGTTCTCAGGATATGTCACAGTTGATGACAAGAAACACAAGTCTCTTTTTTACTACTTTGTTGAATCAGAAACTGATCCTGCCTCAAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTGGGAGTGGGTGCATTCTCTGAAAATGGACCCTTTAGACCAAATGGGGAATTTCTGATTAAAAATGAATATAGTTGGAACAGAGAGGCAAACATGCTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTAGCTCTTCCTATATGACAGTGAATGATGAGGCAACAGGTCATTATGTTCCTCAACTTGCAAAGCTCATGATTGAAATGAACACAAAAAACAAGATATTCAATCTGAAAGGCATAGCCTTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACATACAACATGTTCACTACAGCGTGTAATTACTCTCGCTATGTCAGTGAGTACTATAGAGACTCAGTTTCACCTATTTGTTCAAGGGTAATGGGGCTGGTGAGCAGAGAAACCATAATCAGAATCAGCTTAGCTTGTGNAATCACTGATCTGTGTTGTGTTAGTAACTCTAACAGCATCCTGGACTATGATTTGCTTAACGTGGAAGTGCCAACACTTCCTATTGTTGGATCACTGATAAAGGCTGGAGTTCGGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACTGGAAGCCGCACCTTAGTTCAAAAGTTGGCTAGACAATTAAGACTGAATACAACAGTACCTTACAGGGTATGGTTTGAAGGCCAGCAGTTAATGAAACTTAGGTTGGTGGGTGGACTCAAGTTTATGGCAATATCCTCTCATTTGCAACCGTTAGAGGTGCCGCCCATGAAGTCCCTTTCTCTCAGCCTGAAAGATCACTTGTGCTATTCAAGTCATTCTTGGAAGGAAGGTCTTTGCCTGAAGTTCTCTGAACATACCCCTTTGTTGTTTTCTGATTTAGTTGAGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	188983	192487	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009288.1	PF00450.17	Peptidase_S10	48	160	6.30E-45
Glyur000139s00009288.1	PF00450.17	Peptidase_S10	162	233	1.60E-15
Glyur000139s00009288.1	PF00450.17	Peptidase_S10	284	371	1.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.756
SRR1783600	control	1.988
SRR1783602	moderate drought stress	2.627
SRR1811619	moderate drought stress	2.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.252
DRR006520	Root Summer glycyrrhizin high producing strain	4.720
DRR006521	Root Winter glycyrrhizin high producing strain	0.723
DRR006522	Root Winter glycyrrhizin high producing strain	0.782
DRR006523	Root Summer glycyrrhizin low producing strain	3.282
DRR006524	Root Summer glycyrrhizin low producing strain	3.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.343
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.177
SRR2868004	Drought Stress (root)	31.978
SRR2967015	Control (root)	45.675

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.013
SRR9715740	Leaf	0.194
SRR9715741	Leaf	0.612
SRR9715739	Root	1.473
SRR9715742	Root	4.569
SRR9715743	Root	4.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.624
SRR8749028	MeJA induced 9h	0.285
SRR8749029	MeJA induced 9h	0.274
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.616
SRR8400027	Control - Root	11.148