Gene detail

Gene detail information of Glyur000139s00009287

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G23720.1	dual specificity protein phosphatase family protein
NR	XP_006578725.1	PREDICTED: dual specificity protein phosphatase PHS1-like [Glycine max]
Swissprot	tr\|Q75QN6\|DPHS1_ARATH	Dual specificity protein phosphatase PHS1
trEMBL	tr\|I1JXP8\|I1JXP8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G37730.1}

Sequence

Transcript Sequence

>Glyur000139s00009287.1
ATGGCAAAAGAGCAACAAAAGNAAGACCCTGCAGCAGCAATCACCAACTCTTGCCAAAACCAAAACCAGAAGTGGGAATTGCAGGGTAAAGATGAAGAAGAAAAGAAGTTATTGGAAGTAGAAAACAATGAGGGTGAGGTACCGTTGCCTCTCAGTGTTACTTCCCGGGTTTTGTGTATGTTGGGAGACATCACAGCAGGGCCTGCGTCTATGTTCACGCAATGGCTCCAATCAGTTCGTAAACGCACTTCCAACTATCGCTCCTCTGGATTCCCTCACCGTTCTTCTTCCACCATACCTTCTTGCATGGGAGAACTTGCTGAGGGTGCTAAGATTAATCAGCTTCAGGAGCAAACAGAAATTAGCCTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAATCGAGCTTCTTTTCTTGGGACAGACTCTCTTCACTTCACCACACTGAACACACCAGCAGCAATGAACATTCTGAGGATGAAATGAACCGAGTTCTCGAGTTAACAGTAAATTCTGGAGGGGTTGTGTTCTTTGCCCTTTTCAATGGCCTTGGGAGTGATGATGCTTCTCCAAAAGAAGCAGCTGCTGTTATAAAGATATCATCGTCGAGAATGGCAACACAGTCTGAACGCCTTGGTTATGAATTTGCCAAGCANTTGGGAGTCCAAACTCCACAGGCTAGAGTCATTCACAGTACCAGTTTAGAATGGCTCCAAATAAAGAAAGCCGCAGAAAAAGTGAGGGATGCAGCAAGTTCTGAGGGTGATGAAATTGGTGAAATGACATGTTCAGAACTTTTGGAAGCACTTGAGCTTAGCCGGTGTCTCTTGTTCATGAGTTATGTACACGGTTCACCTTTGCTTGAAAGCTCTAGCGCATTCGAATCACAGGATTCTGCAGAAAGAATATCAGCAGCCCTTGGCAGGGTAATGATGCTGGACCTTGTCATTAGAAATGAAGACAGGCTTCCTTGCNGTCAACTTAGATGGCGTGGGAACTCTGCCAATTTGTTATTGGCTGAAAAAATGATCTCTACGAATACAGATACAATAGGAGAAGCCTTTGATTCTGCAATGAACCAATATGTACCTAGNGTGATTAGGGTACTAAAGAAAGAAAGAAGGTCTACTTCTTCAGTAGACAGCAGATTGAGTTCTCATAATCNTGGAATGACATCACAAGGTTCTTATCTTTCAGAGATCAGAGAATTGACAAAATCCACTGACACGAGCCTTAAAAGTCAAACCTCGCGAGGATCAATGTTTACTGGCTTCAACATTGTGGCTATTGACTCCGGTGTTCCTCGCCGACCACCTGCTGGAAGACGTGCAGATGATCATGTTAATTATCCTAAGTTGATTGAGTTACTACTAAATAGCTCTAAGTTTTCCTCTAACCTTTTACATGATATAACTGGAGGGAGATTAGGATGTCCTCCAGAAGACATAGATATGACAATTGATGTACAAGCAAGTGATGTAACCTCAGTTGTTCATGAGTTCCGAAGTGGTTTCCGTGCTGCTCTTAGGGATCTCCAGGGATTCCATATATTCCTACTTACACTTCACCAAAAACTTGATAACTTATTACGATCATTTAACAATATTATGAGCAAAATATCATTGGGGGAGTCTGAAAAAGAGGATTCATTGAATCCTGACTCACCTACACCTGTTGCTGCTGGTGGTTGTCCCTCTCCAACAAGTAAGGAGAGGTTTTCTAATGATAGCCATCAAGATTTTAGTGATTCAGAATCACAGAGATCTGCTCCAAGGGCGTCATCATCTTCAGGCAATAGAGATTGTTGTGACTCTGCTTCTGTGTCAAGAGAAGGTTGGCATGGAAAATTCTCTAAAGGAAGCGGGGAGCCACTTCACGGTTCCCGCTTTACTGCTAAGCTCCGTGACTTCCATAAATTTGCCAAGGTTGACACAGAATCTTATAAAGAATTGGAACATTGGAACGAAATGCTTAAAAATGAAGCTATTAAGTTATGCCAGGAGAACAACTTCAATACAGGATTTTTTGAGGGCAGTGATAATAACACTGTTGTTGATGCATATGAATTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGTGTTGATATCTGAGGCTGCAAATACAGAGAGACCATCCGCTGTTACCAATAGTCTGTTCATTGGTGGAGCACTATCTGCAAGATCTGTATACACACTGCAACACTTGGGAATCTCTCATATTTTGTGTTTGTGTACTAATGAAATTGGACAGTCAGATTCACAGTTTCCTGATATATTCACATACAAAAATTTCTCTGTGTGTGACAACGAGGATTCTAACATCGGTATCATATTTGAGGAAGCTTGTGATTTTATAGATTATGTTGAGCTAACAGGTCAGAGTGTTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGTCACTTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTTTACTTTATTAAAAGCATGGAATGTTGTGAAACAAGTTCATCGTCGAGCCCAGCCGAATGATGGTTTTGCAAAGATCTTGCTGCAGCTGGATCAGAAACTACATGGAAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAACGATGAAAATTTGCCCCATTTGTGGCAAGAACGCTGGACTGAGCAGCAGCTCGCTAAAGCTCCATCTTCAGAAATCACATAAAAGGCTATCATCAGGGAGCGTAGACAGTGCCATGACAATGGAAATCCAAAAGGCATTGACCACTTTGAAGATTAGCCGTGGTGGGAGTGTCAGTCCCATACAAAGGCAGTCTCATTCAATGATAGATGAATAGATTATTCTTGCAAATATTAAGCACGAAATGAACGTGACACACACCTCACAATTATTTTCACCCATCCACTGTAACGAATATATATGGTACTTTTCCCTTGGTAACTTCTATCATACTCCATTCTATGCACCAATACTGTGATAGAATTTATACGCTTGCGATCATAGGCAATGCATTCATAAATATCACTATTAATCATTAAATTAAATGTCAAACAACAAATACGCCATAGATTGAATTTACAGCAATGCTGGGATGTTACATCATACTCGTTCGTACCCGTGAAAACATATAAAACACCCCAGCTTCTGACGAAATAGCTCATTCCAAANCCAATGCATACAGTGCAATACACAGCGCTCTTTTTCATCTTTTCTCCATACCCTTCAGTTTTCCCCTATGCCCCTCATGGATGTAACCCCTTTTCTCGACTTGTTTAGCTAGGCTGCTATGGGGAAACGTTAATGGGCCTACCAGTAATGAATTAAAAGCTCTAGGTCCATTGACAAGTAAAACAGACTATGACTATGCTTTAAATAAATTATTAAGTACACACATCATAGAAAAGGTAACCATGTTATACAGAAAGTGGCTCTGGTAATGACTCCGGGGTACCGCTGCTGCCATTGAGCACAATCACATTACCATCAGAATCAACATCCACTATCACAGAGTCGCCCTCTTTGATCTCTCTAGAAAGCATCTTCTCAGCCATGCTATCCTCCAAAAGTCGCATTATGGCTCTTCTTAGAGGCCTGGCTNCGTAACTAGGATTATAACCTTCGTCAACCACCCTGTCCCTAAATCTTTCTGTCACTTGAAGTTCAATATCTTTGACCTTCAGTCTTTGAAACACCTCCTTGAGCATTATGTCTGCTATCTCCTTCACCTCCAATTTTGTGAGTTGCCTGAAAACAATCATTTCGTCCAACCTGTTCAAGAATTCTGGCCTGAAGTATTGTTTTAGCTCCTCAGTCACTAAGCTCTTGATTCTATTGTAACTGCTATCCTTCTCATCAAAGTCCAGATCAAATCCAAGTTTGCGGCCTCCTTTCTCAATCACGCTGCTTCCAACATTTGATGTCATTATGAGAAGTGTGTTCTTGAAATCCACAGTTCTTCCCTTACTGTCTGTTAGCCTTCCATCTTCCAGGATCTGAAGCATCATGTTGAATACATCAGGATGGGCTTTCTCAATCTCATCAAAGAGAACAACAGTGTAAGGACGACGCCGAACTGCCTCAGTCAACTGACCACCTTCGGTGTAACCAACATATCCAGGAGGTGAACCAATAAGTTTGGAGACAGTGTGCCTTTCCATAAATTCACTCATGTCAAGCCGAATCATGGCTTCTTCAGAGCCAAAGTAGTATGCAGCCAAAGCTTTGGCCAATTCAGACTTCCCCACACCAGTTGGACCAGAAAAGATGAAGCTGGCAATTGGACGATTAGGGTTCTTCAATCCAACCCGGGCTCGACGGATAGCCCGACTAATGGCTTCAACTGCTTCATCCTGACCAACGACTCGCTTGTGTAAAGTCGATTCCATCTTGAGGAGGCGATCAGATTCATCTGTTGAGACTTTTTCAACAGGAATACCCGTCCAGGAGGAGACAATATGTTGTATGTCAACTTCAGTCACAAGAGGACCTTCATCTCCTGCTTCAGTCTCTGCCTTGCTCATCTCCTTGCCTTTCTCTACAAGTGTTGAGATCTGTGCCTTAAGATCCATTTCTTTATCGCGTAGCTCTCCAGCCTATTCAGAAATTCACGTATCATCAAGCCACAGATTATTGGTCGAAAATTTGTACATTTGAACCAGGAAAAACCACTATACTTATCTTTTTTTTAGGGGGGGGATGGAGGTATACCACTAAACTGTTCTTTAAACTCATTAAACTAAAAACAGAAATCATTCTAGAACAACAATATAAAATTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	178920	186246	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006470 protein dephosphorylation

GO:0016311 dephosphorylation

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0016773 phosphotransferase activity, alcohol group as acceptor

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009287.1	PF09192.5	Act-Frag_cataly	120	412	9.20E-51
Glyur000139s00009287.1	PF00782.15	DSPc	723	855	4.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.272
SRR1783600	control	25.160
SRR1783602	moderate drought stress	33.006
SRR1811619	moderate drought stress	32.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.188
DRR006520	Root Summer glycyrrhizin high producing strain	54.977
DRR006521	Root Winter glycyrrhizin high producing strain	58.386
DRR006522	Root Winter glycyrrhizin high producing strain	56.763
DRR006523	Root Summer glycyrrhizin low producing strain	58.810
DRR006524	Root Summer glycyrrhizin low producing strain	58.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	160.901
DRR006526	Leaf Summer glycyrrhizin high producing strain	160.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.454
SRR2868004	Drought Stress (root)	55.043
SRR2967015	Control (root)	58.138

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	144.995
SRR9715740	Leaf	158.130
SRR9715741	Leaf	149.224
SRR9715739	Root	6.908
SRR9715742	Root	35.167
SRR9715743	Root	35.583

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.293
SRR8749028	MeJA induced 9h	39.004
SRR8749029	MeJA induced 9h	26.077
SRR8749030	Uninduced	39.405
SRR8749031	Uninduced	30.023
SRR8749032	Uninduced	34.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.816
SRR8400027	Control - Root	39.763