Gene detail information of Glyur000139s00009286


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G50920.10CLPC homologue 1
NRXP_003526929.10PREDICTED: chaperone protein ClpC, chloroplastic-like isoform X1 [Glycine max]
COGYP_007063256.10chaperone ATPase [Synechococcus sp. PCC 6312]
Swissprottr|P35100|CLPC_PEA0Chaperone protein ClpC, chloroplastic (Precursor)
trEMBLtr|I1KBY3|I1KBY3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G17360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00139173435181863+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0019538  protein metabolic process


molecular_function

GO:0005515  protein binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000139s00009286.1PF02861.15Clp_N1071591.10E-17
Glyur000139s00009286.1PF02861.15Clp_N1832278.50E-14
Glyur000139s00009286.1PF00004.24AAA2833791.00E-10
Glyur000139s00009286.1PF02151.14UVR4755101.60E-07
Glyur000139s00009286.1PF07724.9AAA_26007742.40E-55
Glyur000139s00009286.1PF10431.4ClpB_D2-small7818613.40E-21
Glyur000139s00009286.2PF02861.15Clp_N1071591.10E-17
Glyur000139s00009286.2PF02861.15Clp_N1832278.50E-14
Glyur000139s00009286.2PF00004.24AAA2833791.00E-10
Glyur000139s00009286.2PF02151.14UVR4755101.60E-07
Glyur000139s00009286.2PF07724.9AAA_26007742.40E-55
Glyur000139s00009286.2PF10431.4ClpB_D2-small7818613.40E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.179
SRR1783600control48.831
SRR1783602moderate drought stress66.113
SRR1811619moderate drought stress65.422

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain75.659
DRR006520Root Summer glycyrrhizin high producing strain75.007
DRR006521Root Winter glycyrrhizin high producing strain76.680
DRR006522Root Winter glycyrrhizin high producing strain74.589
DRR006523Root Summer glycyrrhizin low producing strain79.792
DRR006524Root Summer glycyrrhizin low producing strain79.579
DRR006525Leaf Summer glycyrrhizin high producing strain246.624
DRR006526Leaf Summer glycyrrhizin high producing strain245.532

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)103.785
SRR2868004Drought Stress (root)86.629
SRR2967015Control (root)91.692

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf150.348
SRR9715740Leaf316.489
SRR9715741Leaf264.621
SRR9715739Root8.416
SRR9715742Root66.176
SRR9715743Root56.182

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h45.720
SRR8749028MeJA induced 9h90.154
SRR8749029MeJA induced 9h43.491
SRR8749030Uninduced64.545
SRR8749031Uninduced66.497
SRR8749032Uninduced57.145

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root89.235
SRR8400027Control - Root71.653

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved