Gene detail

Gene detail information of Glyur000139s00009284

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62000.3	1.00E-174	auxin response factor 2
NR	XP_007137862.1	0	hypothetical protein PHAVU_009G161900g [Phaseolus vulgaris]
Swissprot	tr\|Q94JM3\|ARFB_ARATH	0	Auxin response factor 2
trEMBL	tr\|V7B042\|V7B042_PHAVU	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000139s00009284.1
GGGGTGTGTTAAATGCGCACACTCTGTGTGTGTGTGACTGTGGAATGGAATTGCAGCCAATCCCATCCCATCCATCAAGCGCTGTCCGTTAATAGCACGACAGTGCCATTTCCCAATAAAAACAGAACAACTTTCCCGCGAACGTCACGACACACGCCGTTACATGCCAATCCAATCCCTCCTCGACACCCCGCTAACGCCGTCTGTACCCTTCTGTGTCCCCAGCCGCCTTTTATTTATGGAAAAAAATCCTCACCCTTTGCTTCCGCGTCGTTATAACCGGCCCTGCCCGGTCACAAAGGGTGTGATTACCGCCAAATGCCGGTTCCCCCGATATTGGTTAAGGGGATTTGACCGTGGTTGAAATCATTGCACGCTGTTTTGACCACTGGTTGGTTAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTTGCTGCCCCCTCTCAGAAAAAAGCACCCACACACGCTTTCTTATTTCGGTTTTGGTTTTGCTGCAACCATTTCACAGTGTTCAGGGAAAGAGACACAGTTACAGAGGGTGAAAAAGTTCAATTGAAGTTAGATTGTGGAATTGTGTGTTGAAAAGAGGAGTGAATTGGTATTAGGACTTCTGAGCTCTGAGATTAGGCTATTCCGGCGAGAAAGTGAATTTTCTTATTTTCGAGTGTTTTTTTATTTGGTCTGTTTCTGCTGTGGCTTGTTGAGAAGCAGCGAAGACCTCGTGGTAGGAGAAGCGCGGGTTTTCACGATTGTGAAATTTTCGCTAGAGAGTGTTTCAGATGAGAGATCTGTGGTGAGGTCTCTGGAAATGGCATCATCAGAAGTCACGATGAAGCAGAGTTGTTTGAACCATAACGACGGTGGTGGAAACGCTACCGGCGAGGGTCAGAACGCTCATTCGCCGCCGTCCACGGCGAAAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAGCATATGCCGGTGCGGAGCCGGACACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCGGAGCCAAATGACATGTCAAAGCAGCCACCTACCCAGGAATTGGTTGCTAAGGATTTGCATGGGAATGAGTGGCGATTTAGACATATCTTTCGGGGTGAGAATGAGGAACTTCGTGTTGGTGTCAGGCGAGCAATGAGGCAGCAGGGTAATGTTCCATCCTCAGTTATCTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCTATCTTGACTGGGACAATATTCACCGTTTATTACAAGCCTAGGACCAGTCCCGCTGAATTTATTGTTCCATATGATCAATATATGGAGTCTCTGAAAAACAATTATACCATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAACAGAGATTTACTGGTACCATTGTTGGAATAGAAGATGTTGATCCCAAAAGATGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACACCTCGTCCTGAGAGAGTTTCCCCCTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAATCCTCTTTCAATGCCCAGACCTAAAAGGCCTCGGTCTAATGCCGTTCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCATCATCTAAGGTTAGCATAGACCCTTTACCGGCAAATGGGTTTCCAAGGGCCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAACGAGTCGGAAACTGCTGAAAGGTCTGGTGTTTGGCCACCTGCAGTAGATGATGAAAAATTTGATGTTGTTTCTACTTCAAGGAGGTATGGGTCAGAGAGCTGGATGTCTGTTGGGAGGAATGAGCCTACATATTCGGATCTTCTTTCAGGCTTTGGGGCCAGCGGAGATCCTTCCCATCCATCCTTGGTTGATCAANGGACCCCTGTAGCTTATCCTGCTAGAAAGCATCTGGTAGATCACGAAGGAAAACTTAATGTGCATCATCCCTGGCCTGTAATGCCCTCTAGTCTATCACTAAACATTTTGGACAATAATACAAAAGGTTCTGCGCATGGTGGTGATACAGCTTACCAAGCTCGAGGAAATTTGAGGTACACTACATTTGGTGAATACCCTATGCTTCATGGCCATAAAGTGGAGCATCCACATGGAAACTTGATGCCACCACCAAATCAATATCAGAGTCCTTGTTCAAGAGAGATAATGTCAAAATCAACACCAGTGAAACAAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCTGTTGCGCCAGAGCCCTCTGTATCACAAAGAAATGGGACAAGTGAGCCAGCTGGTCNAATGCATCCAACACCACACAACCAACAAACCTCTGAAAATGATCAGAAGTCAGATCACTCAAAGGGCTCAAAACCGGCAGATGGTCTAGCTGACCTTGATAAGCCATCACAAACTTCTCAGCTGCATCTGAAAGATGTTCAATCCAAATCAACCGGTTCTGCAAGGAGTTGCACTAAAGTTCACAAGAAGGGTATTGCACTTGGTCGGTCAGTGGATCTGACAAAGGAGTTCTGTGCTATGGTTCGGAAAATTTATATCTACCCTAAATTGGAGATTCAAAAAATGAGCCCAGGTACTCTGAGTTCAAAAAATGAAGAGAATCAGTCAGGCAGCGAAGGTGCAGATGCAAAAGAAGTTAAAGTTAAATTTTGCTCAAACTCGTCTGTAAGAGCGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	134742	140351	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009284.1	PF06507.8	Auxin_resp	137	219	4.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.895
SRR1783600	control	56.153
SRR1783602	moderate drought stress	75.588
SRR1811619	moderate drought stress	74.936

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.029
DRR006520	Root Summer glycyrrhizin high producing strain	65.466
DRR006521	Root Winter glycyrrhizin high producing strain	178.770
DRR006522	Root Winter glycyrrhizin high producing strain	173.480
DRR006523	Root Summer glycyrrhizin low producing strain	92.153
DRR006524	Root Summer glycyrrhizin low producing strain	92.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	60.162

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.914
SRR2868004	Drought Stress (root)	65.814
SRR2967015	Control (root)	90.872

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.187
SRR9715740	Leaf	84.117
SRR9715741	Leaf	84.913
SRR9715739	Root	35.428
SRR9715742	Root	133.670
SRR9715743	Root	115.926

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.891
SRR8749028	MeJA induced 9h	29.496
SRR8749029	MeJA induced 9h	20.070
SRR8749030	Uninduced	33.834
SRR8749031	Uninduced	25.027
SRR8749032	Uninduced	13.183

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.366
SRR8400027	Control - Root	83.830