Gene detail

Gene detail information of Glyur000139s00009276.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07780.5	1.00E-60	phosphoribosylanthranilate isomerase 1
NR	XP_004500497.1	2.35E-94	PREDICTED: n-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like [Cicer arietinum]
COG	YP_001424612.2	7.00E-21	bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|Q42440\|PAI1_ARATH	2.00E-82	N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A072UYC1\|A0A072UYC1_MEDTR	3.00E-94	N-(5-phosphoribosyl)anthranilate isomerase {ECO:0000313\|EMBL:KEH34799.1}

Sequence

Transcript Sequence

>Glyur000139s00009276.1
GAAAAAAAAATACAAAAAGCACACTTAACGTCAAAACGCACAGCCGTTTAGCAGCTGCGGCCTCGGCTTCTTTCTTCTCCGTTGTAGTTTCGTTCACTGGCTGCCTTGCTTTTCTTCTCTTTCTCTCTCACCGGACAGCAACACCGACGGTTCTATCACCATTCCGAAGTTTCAATATGGCTTCAGTCTTAAAAAAAGAGNTTTGCAGTCTCAATTTTTTTTTATAAACACTCAATTTCAATGATGAGAAGGCTGTTCTACTTCTACATATTTTTGGAGTGTATCCTAATTCTGAAGATATCAGAACCAAGAGAAGAAGAGAGAATTTGAGGTTCAACCACNGGGAGTTACTTGCAACTCAGAGCCNCAAACTTCCACAAAAGACCAATTCCAGTCATTCCTCATGCAGACTTACTTTCATGTTTTTGCTTTCATGGAATATGCCAAGGCACTAGCTAAAGATGCTGCCATGGCAGCCGAAGCTGGTGCAAACTTTATTGGAATGATCATGTGGCCNAACTCAAAACGTTCTGTTTCTCTTTCTGTTGCAAAGGAGATATCAAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGAGTATTTGTGGATGATGATGAAAATCGTGTGATATATGTTCTCCATGCAAATGGGGATGGGAGCCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTTCTGGTAGATAGTGCAAAGGGTGGCAGTGGCGAAGCATTCGATTGGGCACAGTTCAAATTACCAAAAATTAGAAGCAAACATGGTTGGCTCTTGGCAGGAGGGATCAATCCTGAGAATGTTTGTGAGGCTCTATCTACTCTCAAACCTGAAGGGGTGGATGTAAGTAGTGGCATTTGTGCATCAGATGGCATCCAGAAGGATCAATTAAGAATAGCTTCCTTCATGAATGCAGTACATTCTGTTCAGTATTGAGTCGCCTTAGATTATTATGAACCTTAAGAAAGGGAATGTTGTAATTTCAAAACATCCACATGATGTCTTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	64272	67304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01817	trpF	EC:5.3.1.24	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

biological_process

GO:0006568 tryptophan metabolic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004640 phosphoribosylanthranilate isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009276.1	PF00697.17	PRAI	74	179	1.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.419
SRR1783600	control	1.527
SRR1783602	moderate drought stress	1.391
SRR1811619	moderate drought stress	1.346

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.726
DRR006520	Root Summer glycyrrhizin high producing strain	2.940
DRR006521	Root Winter glycyrrhizin high producing strain	2.980
DRR006522	Root Winter glycyrrhizin high producing strain	2.778
DRR006523	Root Summer glycyrrhizin low producing strain	3.031
DRR006524	Root Summer glycyrrhizin low producing strain	2.932
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.939
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.022
SRR2868004	Drought Stress (root)	3.663
SRR2967015	Control (root)	3.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.445
SRR9715740	Leaf	0.822
SRR9715741	Leaf	1.778
SRR9715739	Root	0.655
SRR9715742	Root	2.558
SRR9715743	Root	2.485

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.911
SRR8749028	MeJA induced 9h	3.007
SRR8749029	MeJA induced 9h	3.987
SRR8749030	Uninduced	1.660
SRR8749031	Uninduced	0.378
SRR8749032	Uninduced	0.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.019
SRR8400027	Control - Root	6.821