Gene detail

Gene detail information of Glyur000139s00009275

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55990.1	6.00E-153	Plant protein of unknown function (DUF828)
NR	XP_004500498.1	0	PREDICTED: uncharacterized protein LOC101501820 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LY46\|TBL29_ARATH	0	Protein ESKIMO 1
trEMBL	tr\|I1MZ15\|I1MZ15_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G02980.1}

Sequence

Transcript Sequence

>Glyur000139s00009275.1
CAAAGACAACACTATTTCACCAAACCTCAACTAAACAAATAAACTAAGTAACACAGCCTAAAACTAAATTATTCCAAACAAAAAAAATAAAAAAATGGTAAAAAAAATCTCATTGTTTCTTCATCTCAATGTCGTTCAGTTCTTTCTCTAATCTCTATATTTCTATCCCTTTCTCTCCCCCCTCCTTGCAGACAAAGGCCTTTTGTTATTCANTTCTCTATCTCTCTCTCCCATGCAGCCTCTTCACCGCAAGAACAATATTTTCTACCCAGAAAAAGCCATGGCAATGANAGGCAGAAAGAACAATAGCATTCCCATTTTCGTTGTTGTCTTCTCCTTGTTCCTCTTTGGGGTCTTCATGTACAACGAGGACGTCAAGTCAATAGCCCAGTTCACATTCTCATGGCCCAAAGCTCAAGAAATCCAAGAAGAGAAATTGGAAGAAATAGACAATTCTGTTACGATAACGGTTTCTGAGAGTTCAAGAGCTCAACAACAACTGAAGAAAATTAGCCAGGTTGAGAATGAGGATTCTGAGGAAACCCAGAAACCGATTGATTTGAAATCAATTGTAGCAAAGGAGAAAGAGGAAAAGATTGAATTTNCAACAGTGGAAGAGAAAAAGGAAGAAGAGGTTATGTTGTTGCCACCAGAAGAATGTGACTTGTTTACAGGGGAGTGGGTTCTGGATAACGTGACACATCCTTTGTACAAAGAAGAACAATGCGAATNCCTCACTGCACAAGTTACATGCATGAGGAATGGAAGACGTGATTCTCTCTATCAGAACTGGAGATGGCAGCCCAGAGATTGTTCTTTGCCCAAGTTTAAACCAAGACNTCTGCTTGAGAAGCTTAGAGGGAAGAGGCTTATGTTTGTTGGAGACTCNCTGAACAGGAACCAATGGGAATCAATGATTTGTCTAGTCCAGTCGGTTGTTCCTCAAGGCAGAAAGAACTTGACCAAGACTGTGGAGTTCTATTGGGCACCATTCCTTGTGGAGTCAAATTCAGATGATCCAACAATGCACAGTATATTGAACCGAATTGTGATGCCTGAGTCAATCGAGAAGCATGGTGTGAATTGGAAGAATCAAATTCATGAAACTGATTTGGGTACTGTTTGTCGTGGTGGGGTGATATATGCAAAAGACGAGGGAGCTACNGAGTACGATGAAATCCCTCGGCCAATAGCATATGGGAGAGTCCTTGAGACGTGGTCAAAATGGGTGGATAACAACATTGATCCAAATCGCACCAAAGTTTTCTTCAACAGCATGTCCCCTCTTCATATCAAGAGTGAGGATTGGAACAATCCGAANGGTATAAAATGTGCAAAGGAAACTACCCCAATTCTCAACATGTCCTCCACCCCATTACAAGTGGGAACAGATCGCCGCCTTTTTGTCATTGCCAAAAACGTGACACAATCGACAANGGTCAAAGTGAATTTCCTTAACATTACCACCTTGTCAGAGTTCAGAAAAGATGCACATACCTCTGTTTACACAATACGTCAAGGAAAGATGTTAACTCCAGAGCAACAAGCTGACCCAGCTACTTATGCAGATTGCATCCATTGGTGTTTGCCTGGGTTACCCGATACATGGAATGAGCTCCTTTATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00139	56351	59804	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0050826 response to freezing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000139s00009275.1	PF14416.1	PMR5N	141	195	9.10E-22
Glyur000139s00009275.1	PF13839.1	PC-Esterase	196	464	2.50E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.981
SRR1783600	control	2.981
SRR1783602	moderate drought stress	1.926
SRR1811619	moderate drought stress	1.829

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.861
DRR006520	Root Summer glycyrrhizin high producing strain	2.874
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.728
DRR006524	Root Summer glycyrrhizin low producing strain	2.560
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.604
SRR2868004	Drought Stress (root)	7.503
SRR2967015	Control (root)	9.466

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.386
SRR9715740	Leaf	0.216
SRR9715741	Leaf	0.104
SRR9715739	Root	0.067
SRR9715742	Root	1.375
SRR9715743	Root	1.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.202
SRR8749028	MeJA induced 9h	0.456
SRR8749029	MeJA induced 9h	0.130
SRR8749030	Uninduced	0.089
SRR8749031	Uninduced	0.066
SRR8749032	Uninduced	0.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.722
SRR8400027	Control - Root	9.420