Gene detail information of Glyur000138s00011695 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05975.1 | 1.00E-21 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KHN40590.1 | 1.11E-79 | hypothetical protein glysoja_001088 [Glycine soja] |
| trEMBL | tr|G7KZ69|G7KZ69_MEDTR | 8.00E-79 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AES79885.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 256996 | 258223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011695.1 | PF03168.8 | LEA_2 | 103 | 204 | 1.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.875 |
| SRR1783600 | control | 5.721 |
| SRR1783602 | moderate drought stress | 4.639 |
| SRR1811619 | moderate drought stress | 4.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.678 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.836 |
| SRR2868004 | Drought Stress (root) | 9.497 |
| SRR2967015 | Control (root) | 10.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.030 |
| SRR9715740 | Leaf | 14.538 |
| SRR9715741 | Leaf | 9.948 |
| SRR9715739 | Root | 3.769 |
| SRR9715742 | Root | 2.863 |
| SRR9715743 | Root | 2.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.243 |
| SRR8400027 | Control - Root | 14.317 |