Gene detail information of Glyur000138s00011693 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20780.1 | 1.00E-53 | calmodulin like 42 |
| NR | XP_004492602.1 | 1.08E-92 | PREDICTED: calcium-binding allergen Bet v 3-like [Cicer arietinum] |
| COG | YP_007118813.1 | 1.00E-06 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|P43187|ALLB3_BETPN | 6.00E-67 | Calcium-binding allergen Bet v 3 |
| trEMBL | tr|I3S774|I3S774_LOTJA | 7.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:AFK36116.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00138 | 253173 | 254900 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000138s00011693.1 | PF13405.1 | EF-hand_6 | 26 | 54 | 5.00E-06 |
| Glyur000138s00011693.1 | PF13499.1 | EF-hand_7 | 112 | 172 | 1.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.993 |
| SRR1783600 | control | 4.075 |
| SRR1783602 | moderate drought stress | 7.019 |
| SRR1811619 | moderate drought stress | 6.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.275 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.027 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.734 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.561 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.320 |
| SRR2868004 | Drought Stress (root) | 58.934 |
| SRR2967015 | Control (root) | 44.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.837 |
| SRR9715740 | Leaf | 16.314 |
| SRR9715741 | Leaf | 44.320 |
| SRR9715739 | Root | 14.571 |
| SRR9715742 | Root | 24.089 |
| SRR9715743 | Root | 21.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.173 |
| SRR8749028 | MeJA induced 9h | 5.309 |
| SRR8749029 | MeJA induced 9h | 3.673 |
| SRR8749030 | Uninduced | 11.410 |
| SRR8749031 | Uninduced | 5.403 |
| SRR8749032 | Uninduced | 5.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.486 |
| SRR8400027 | Control - Root | 23.202 |