Gene detail

Gene detail information of Glyur000138s00011683.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01960.1	1.00E-153	RING/U-box superfamily protein
NR	XP_004492595.1	0	PREDICTED: RING finger and transmembrane domain-containing protein 2-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6NPT7\|HRD1B_ARATH	5.00E-11	ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305}
trEMBL	tr\|G7KY88\|G7KY88_MEDTR	0	Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313\|EMBL:AES79876.1}

Sequence

Transcript Sequence

>Glyur000138s00011683.1
GAGAAAGCAAAGCAAGTATAGTATCCGAAATGGTTGCTTCTCTTTTGTTTCTTTTNGTCCCGTAGCGAACCCCATCTTTGTCTCTGTCTCCTCTTTCTCTCTCTCTCCCTCTCTCTGGCGCCCTTTCCCTGCACATCACAGCAGAGACCGAGCCAGCCAGAAAGAAGAAGAAGAAGAATAGAAAGATAAACCCACCCAGCGCCAAATTCCAAACCCAGCGCCAATCACTCTCTTATTACTTCACAGTTTTTCACCATCAAAAACAACAATCCAACTCTTAATTTTTTTAATNATCATTGATTGTATCATTCCACCCTTCAAACCCCAAACCCTAGCCTCTCTTTTTTCCCCCGTCCTCTTCCGTTCTTCGCTAATGCCGCATATCGTTTGATTCAGGAGAATCGCCTTCGCAGTTAGGGTTAGGGATTTGACGCGAATGGAAGGGAGCGGGGACATGTTCAGAACTTCTCCGGCATCGGGAGCGTCCTCGCTATCGTCGTCGAATTCGAGGCGATACGGATTCCCGTCGGCGTCAAGCATAATTCAGGCACCGTTATCGCTGCTTCTGGAATATTCNGGTATTCTTCCGGCGAGGTCCAATCAGCAGCACCAGCAGAACCCCGATGCCGTCCCCAACGATGGCGAGGTCTCGATTAGGATCATTGGCTCTACGGAGCAAGACCATCATCACAGGGAAGAACAGCCTCCTCCCGGTGGTGGTGATGCCACGGCCGCTGCGATGCCGTCTTCCCCTTCGCAGGGTGATGCGGAGGGCGTTTCGCCGACAGGGAATGGAAATGCCGATGCCGAAGCTGCTGGAGGAGACGTCGTTGGTGCCAATGGGAGGGATTCTTCTTACCAGAGATATGATATTCAGCATGCTGCTAGGTGGATTGAGCAGGTCTTGCCCTTTTCATTGCTTCTCTTGGTGGTCTTCATTCGGCAGCATTTACAAGGGTTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATCCTGCGGAAACAAACGGCCCTGAAGGGAGAGAGGAAAATGCCTGTTTTAATTGGAATTTCTGTTGCTTTCGCGCTTCATGTGGTNGGGGTTTATTGGTGGTATCAGAATGATGATCTAGTGTATCCGTTGGTCATGCTTCCTCCCAAAGACATACCGCCCTTCTGGCACGCTATTTTCATCATCATGGTGAATGGTGTGTTTCTCTCTCCNAATTACTGCCTAGATACTTTGGTACGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTAATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAGGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACGCCGGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCGCTGATGACAGGATTATATCTAACTTTTAAGCTCACATCTGTTGTTGAAAAGGTGCAAACATTCTTTGCTGCAGTGAAGGCATTGTCGCGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACTTGTCCNTTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCGACTAGTTTGTTTTTCCAGTTATTCTGAAATCATAATCATCATAATATAATACAAGCCGGGAAGTTTTTTCTGCTTTGANGCCCTTACTTTTTTCGAAGCAGCAGTCCTGATCTATATACATCAACACATGTAAAATCACTGGAGGCACTCTGGAGACACTCAGAGAAGATGAATGCCAGCTAAATAGAATTAAACTGATCACCTATTCATATAATGTACTTGTAAGAGGTTAAGTGTANCCATATGACCCTGTAAACTAGGAAGTTCATTGAAAATATAATTAAATGTGACCTCTTCATTTGCAAGGAATGAAGGTCTTTGTCCGAANTCCATAGTCTGTGATATAGTGTGAATCAAAGTAGCAATTTTAAACATTTTTATTTTTGTATCTCTTTTGATGTGTGGTTTTTGAAAGTTGAAACACCCCCACAAGGAGTGTTTGCTCCATGGGCAGGTTATGGTCAACGANCTCACCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00138	198557	203968	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000138s00011683.1	PF13639.1	zf-RING_2	383	422	9.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.282
SRR1783600	control	33.618
SRR1783602	moderate drought stress	56.217
SRR1811619	moderate drought stress	56.972

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.583
DRR006520	Root Summer glycyrrhizin high producing strain	37.025
DRR006521	Root Winter glycyrrhizin high producing strain	92.567
DRR006522	Root Winter glycyrrhizin high producing strain	88.788
DRR006523	Root Summer glycyrrhizin low producing strain	44.069
DRR006524	Root Summer glycyrrhizin low producing strain	44.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.799
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.360

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.643
SRR2868004	Drought Stress (root)	49.166
SRR2967015	Control (root)	58.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.756
SRR9715740	Leaf	34.686
SRR9715741	Leaf	37.540
SRR9715739	Root	36.329
SRR9715742	Root	41.221
SRR9715743	Root	39.286

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.066
SRR8749028	MeJA induced 9h	35.114
SRR8749029	MeJA induced 9h	27.773
SRR8749030	Uninduced	19.524
SRR8749031	Uninduced	23.047
SRR8749032	Uninduced	26.306

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.532
SRR8400027	Control - Root	48.009