Gene detail

Gene detail information of Glyur000138s00011680

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38610.2	5.00E-134	RNA-binding KH domain-containing protein
NR	XP_003552330.1	0	PREDICTED: KH domain-containing protein At2g38610-like [Glycine max]
Swissprot	tr\|Q9ZVI3\|QKIL3_ARATH	4.00E-179	KH domain-containing protein At2g38610
trEMBL	tr\|I1N3C0\|I1N3C0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G44980.1}

Sequence

Transcript Sequence

>Glyur000138s00011680.1
GAGAAAACTGTCTACCCTTTTTCCCTTTTTTGTTTTTCTCCTTATTACAGGCTCCCTTTATTGATGGTGGTGTGTTTCTCCTTTTTCTTCTGCAAGAACTGCACCAACTAAACCTTCTTTTTCCAACTTTTTTTTTGTTGGGTTTTTTTTAGAGGTTGGTTTTTCTTCCAATAATCCTTAAGGAAAGCTAAAANAGAAGAAGAGGAAAAAGGGGGAGCAGAAGCCATGTCAGGGTTGTATAATCCCAACTTCTCACCTGCTAGAGCAGCTTCTCCTCAGATTAGGAGCACCCCAGACGTGGACAGTAGTCAGTATCTATCAGAGTTGCTGGCAGAGCATCAGAAGCTTGGACCCTTTATGCAAGTACTCCCTATATGCAGCCGCCTCTTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAACCAAGGTTTTGGTGACTTTGATAGACTAAGGCATAGAAGCCCTAGTCCTATGGCTTCTTCGAATCTCATGTCAAATGTCAGTGGGACAGGATTGGGTGGATGGAATAGTCTTCAGCAGGAGAGATTATGTGGACCCCCTGGAATGACAATGGACTGGCAAGGTGCACCTGCAAGTCCTAGTTCATTCACTGTTAAGAGAATACTGCGCTTGGAAATTCCAGTAGATACATACCCCAATTTCAATTTTGTTGGAAGACTTCTGGGACCTAGAGGCAATTCTTTGAAACGGGTAGAAGCTACTACTGGTTGCCGTGTGTATATTCGAGGAAAAGGATCGATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCAGGCTATGAGCATCTCAATGAACCTCTACACATTTTGATTGAGGCTGATTTGCCTGCAAATATTGTTGACATGAGGCTCAGACAGGCTCAGGAAATCATAGAAGAACTGCTCAAACCTGTGGATGAGTCACAAGACTTTATTAAGAGGCAGCAGTTGCGCGAACTAGCCATGCTGAATTCAAATTTCAGAGAAGAGAGTCCGGGGCCAAGTGGTAGTGTATCCCCATTCAACTCCAGTGGGATGAAACGCGCAAAACCGGGTCGCTGAAAATATGCGTGTCGATGGTGATGGTGTAGATGGATATTATGGTCTTCTCCAGCTATTCATTGCTGAGAATATCTTCCCAGTACATGTCTCATTCAATGCAGCTATAAAAAGAAAGAATAGGCTAACAATTCTTGCTGGTTAGCATTCTGGTGGTTTTTTCCTTCCCTTTTGTCCCTCCTACCTTTTCCTTCTTGAACAGANAAGGAGACAAAGCTGGAATGAAGAATTTCTAAAAAAGACAAAATTTTATATAGTTGGGTATTGAGAATAGGTTTGTTCAAATCAACCCTTTTTTTCCTCTCTTGTAAACTTAATACATTCATTGGATTTATTCTTGCGTCAGTTACTTTTGAGAAGTGTGGAATATGAACATGAATATATATACATGTGATGGATGGTGATGGTGAAGTTTTAGGTCTAAGAAGACAATGATGAAGTGTTGTTGGCATGTGTCACGTGTCANGTCTCATGGTATTTTAATATTTATAAGTTAGCATAGGCTGGATTCTTTTTAGTTGTATTATTGTTACAAGCATTATTTGTATTATTCTCTTATGATGCATGTCAGATAAACAAACACCTTACCATGTACCATTAAAGAACAAAAAAAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00138	167243	173412	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000138s00011680.1	PF00013.24	KH_1	149	178	0.00026

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.839
SRR1783600	control	19.874
SRR1783602	moderate drought stress	21.995
SRR1811619	moderate drought stress	22.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.149
DRR006520	Root Summer glycyrrhizin high producing strain	21.929
DRR006521	Root Winter glycyrrhizin high producing strain	25.274
DRR006522	Root Winter glycyrrhizin high producing strain	24.338
DRR006523	Root Summer glycyrrhizin low producing strain	34.873
DRR006524	Root Summer glycyrrhizin low producing strain	34.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.001
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.880

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.381
SRR2868004	Drought Stress (root)	43.145
SRR2967015	Control (root)	40.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.088
SRR9715740	Leaf	25.650
SRR9715741	Leaf	26.242
SRR9715739	Root	8.716
SRR9715742	Root	18.041
SRR9715743	Root	15.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.665
SRR8749028	MeJA induced 9h	17.052
SRR8749029	MeJA induced 9h	12.083
SRR8749030	Uninduced	14.572
SRR8749031	Uninduced	7.742
SRR8749032	Uninduced	7.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.196
SRR8400027	Control - Root	48.215