Gene detail

Gene detail information of Glyur000138s00011659

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08710.2	5.00E-56	thioredoxin H-type 9
NR	XP_004492580.1	1.00E-79	PREDICTED: thioredoxin H-type-like isoform X1 [Cicer arietinum]
COG	YP_003967813.1	2.00E-15	thioredoxin [Ilyobacter polytropus DSM 2926]
Swissprot	tr\|P85801\|TRXH_POPJC	4.00E-71	Thioredoxin H-type
trEMBL	tr\|D8L5E3\|D8L5E3_MEDTR	9.00E-80	Thioredoxin {ECO:0000256\|PIRNR:PIRNR000077}

Sequence

Transcript Sequence

>Glyur000138s00011659.1
ATAGATATAGATAGCTTATGGTTGAAGAACCCATTTATTTTGTGTCTTAAATTGTTCACGCAAAACGCAATAGCTCCTTATCTTCTCCGAGTCCGAGATAGATCCAGTGTGTGTCGTTTCGTAATCGCTCCTTCGTTTCAGCTCAAATCTGCAAATTGGGCTTCTGTTCATCAAAGTTTACAAGTTAGTGGCTTTCAAACAATTATATGGGGAGTTGCGTGGCTAAGCCTCAGGCTAAGGATAATGACTCTGAGCAACATGTGGAGTTTGCTAATGGAAATGTATCACTTATTACCACCAAAGAATCNTGGGACCAGAAGTTGGCAGAAGCAAGGAGGGATGGCAAAATTCTAATAGCAAAGCTCCATGTTCAACAGGTGCTTGCAAATTTCAGTGCAGTGTGGTGTGGTCCTTGTAAGATGATTGCGCCATACTACTCCGAGTTGTCTGAGAAATACACATCTCTGATGTTCTTAGTAGTTGATGTGGATGAACTAACTGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGACAACAAGTTGACAAACTCGTAGGAGCCAACAAGCCAGAGCTGCAGAAGAAGATTGCTGCCATTACTGATTCAGTTCCTCAACGTGGACAATGAAAACCGGACCGGACCAGACCAGACCGAAGAGTAGCAATGCAGGATCCTGCAATGTTTTGTTTTTATTCCTGTTTGTTGGACGCTGTGGGCTTTCTCCCTTCACAAGTCACAACCGTGGCCATGAGGGTTTCTTCATGTTTTGCCGTGAGTGTCTTTGTATTATTTTTTTAATTTGGGTGTAAATATAAAATGTTTCACATGAATGTCTCCTATTCAAAGTGAGATATAAAAAATTTGTTCTGTATAGTTGTCTAAGCAAAAGTGGCCATGCATTATCATTGCATGATAGTTCAAGTGGTTAAGAGTTTGATTTCTTTAGGTTTTGGTAAAGTGTTGGACGTTCAAATGACCAACACTTGATGGTGGATNAAACTCAGGAGGTCTTGGCATCTTGTAAGGATTATAGTTTGATAGAAGCTCTTATGGAAACATAACCCTCTTAAGTAAATTTGACATCATTAGCCACGATATTCAAAAGAGTGTGCATGAGCCGATTTTCATCACCGATGGCATAAGTTGGCAGATCACCAATTGAAACATAACCCTCTTATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00138	52783	58316	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000138s00011659.1	PF00085.15	Thioredoxin	55	137	1.80E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.038
SRR1783600	control	19.187
SRR1783602	moderate drought stress	17.946
SRR1811619	moderate drought stress	17.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.623
DRR006520	Root Summer glycyrrhizin high producing strain	26.410
DRR006521	Root Winter glycyrrhizin high producing strain	30.985
DRR006522	Root Winter glycyrrhizin high producing strain	29.991
DRR006523	Root Summer glycyrrhizin low producing strain	36.137
DRR006524	Root Summer glycyrrhizin low producing strain	34.859
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.730
SRR2868004	Drought Stress (root)	44.581
SRR2967015	Control (root)	50.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	66.383
SRR9715740	Leaf	68.251
SRR9715741	Leaf	77.649
SRR9715739	Root	11.676
SRR9715742	Root	19.175
SRR9715743	Root	17.707

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.503
SRR8749028	MeJA induced 9h	50.709
SRR8749029	MeJA induced 9h	93.543
SRR8749030	Uninduced	83.826
SRR8749031	Uninduced	215.195
SRR8749032	Uninduced	215.658

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.832
SRR8400027	Control - Root	29.331