Gene detail

Gene detail information of Glyur000138s00011650.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08720.2	0	serine/threonine protein kinase 2
NR	KHN29492.1	0	Serine/threonine-protein kinase AtPK2/AtPK19 [Glycine soja]
COG	NP_268044.1	2.00E-32	serine/threonine protein kinase [Lactococcus lactis subsp. lactis Il1403]
Swissprot	tr\|Q39030\|KPK2_ARATH	0	Serine/threonine-protein kinase AtPK2/AtPK19
trEMBL	tr\|I1L6Z1\|I1L6Z1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G41010.1}

Sequence

Transcript Sequence

>Glyur000138s00011650.1
TGAATGGGGCCATATATTCCGCTCGGTCTCCACCCACTTAAATCGAGCCACGTGTCTCAAAAAATTAGCAAAAGATAGCCATCAATTCCTTCAAAGATGCTATAAGTGGCGACGCGGGTGCTATGCCCACACAAAAATATTCCTGAAAACAACGCCCTCCTTCTCAGCCCTTCCCATTCCCTCTTCCCCGCAACCTTCCCAGATTGTTAATTTGGATCTTCATGAGTTCAACAACCACTGGAGCATACTTGGTTTCCTGTAACTCGGGAAACAAAAACAACAACCTCTTCTGCTGGATTTTGATCTGCTTGCTGCCAAAATTTTTGGGAACTGCATTTGCATACATCAACTTCCTCCTAATTCAGGCCATTGATAGGAGTCCATCGGCAGTGGGGGTGTTGGAGAACTTCGGACCGATTAATCTATAATTATTAGTCTGGTCATCAGCATAATTAGATCCCTTTTCGTTAAGTGGTGAAAAATGGTTTCCTCTCAGTTTTCCGGTTTGACTAAGGCTGGCATATGCAAACCTTTACAGACTCAGTTGCTCTTTCCAGCAAACATTCCTGAAACTCTAAGCACAGATCATGTTGAGCTAGATTTCTCCGATGTCTTTGGTCCACTTACAGTGGAAGTGAATAACATGGATTCCAGTACTGCTGAGCCTGTAGAAGAATCAAGCGAGCTGGTTTATGATGACCCAGAAGTCATTTACACCCGCTCACATTCTCTGGTTGGCCCTTCTACTTGTGTCAGTCAATCACTTAAGCTNGGCAAACTCACCATACATGAGACTGAGGACTCGTTGGAACTAGTGGAGCATGTCGCTGGAGAGACCATTAAAGACATCGAAGAATCTTCCTTTGACAATGTTATCATTCAGGAATCTTTGGAGGATGAAGACGGGAATCTCATGAAGATCCAGAGAGTTAGCTTTGAAGATTTTGAGATTCTGAAGGTTGTGGGACAGGGTGCATTTGCAAAAGTATATCAGGTGAGGAAAAAGGGCACTTCTGAAATATATGCTATGAAGGTTATGCGAAAGGACAAAATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTTGACACAGATAGAGCACCCCTTTGTTGTACAACTCAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTTGTCAATGGGGGCCATCTCTTCTTTCAGCTTTATCACCAGGGCCTCTTCAGAGAGGATCTAGCACGCATATATGCAGCTGAGATTGTTTCTGCAGTGTCCCATCTCCATTCAAATGGAATAATGCACCGGGATCTAAAACCTGAAAATATCCTGCTTGATGCTGATGGCCATGTTATGTTGACTGATTTTGGTTTAGCAAAACAATTTGAAGAAAGCACAAGATCTAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGCATCTTACTGTTCGAGATGCTTACTGGAAAGCCGCCCTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCTTATTTGTCAAGTGAAGCGCATTCACTGTTGAAAGGGTTGCTACAGAAGGAGGCAACAAGGCGCTTAGGTTCTGGGGCAAAGGGGATAGAGGAAATTAAAGGGCACAAGTGGTTCAAACCAATAAATTGGAAGAAGTTGGAAGGACGTGAAATCCAACCAAGCTTTCGGCCAGAAGTAGCTGGGAAGCACTGTGTTGCCAACTTTGAGAAGCGATGGACTGACATGCCAGTTGTGGATTCACCAGCTGCCAGCCCAAATGGTGGAAACCCCTTCAAAGACTTCTCTTATGTGAGGCCTGCTGCCTCTTTTCTTCAAAGGGAAAGCCCTGCTTGCTAACTCCACAGCTTGCATTATTATTATTGACACATTTGCCTTAATATTTAAGATGTTATACTACGTGGTTGCTTTGTATTTGGATGCGTGACAACTGTGGGACACTGTCTATCCCAAGAACACGTTTTTGGCCCAGTTTGAATAAGTTTCTCCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00138	8889	13858	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04688	RPS6KB	EC:2.7.11.1	ErbB signaling pathway	map04012
			TGF-beta signaling pathway	map04350
			HIF-1 signaling pathway	map04066
			PI3K-Akt signaling pathway	map04151
			AMPK signaling pathway	map04152
			mTOR signaling pathway	map04150
			Autophagy - animal	map04140
			Fc gamma R-mediated phagocytosis	map04666
			Insulin signaling pathway	map04910
			Longevity regulating pathway - mammal	map04211
			Longevity regulating pathway - worm	map04212
			Longevity regulating pathway - multiple species	map04213
			Choline metabolism in cancer	map05231
			Proteoglycans in cancer	map05205
			Acute myeloid leukemia	map05221
			Breast cancer	map05224
			Insulin resistance	map04931
			EGFR tyrosine kinase inhibitor resistance	map01521
			Endocrine resistance	map01522

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000138s00011650.1	PF00069.20	Pkinase	155	411	6.60E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.143
SRR1783600	control	11.152
SRR1783602	moderate drought stress	67.781
SRR1811619	moderate drought stress	67.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.869
DRR006520	Root Summer glycyrrhizin high producing strain	29.480
DRR006521	Root Winter glycyrrhizin high producing strain	36.808
DRR006522	Root Winter glycyrrhizin high producing strain	35.710
DRR006523	Root Summer glycyrrhizin low producing strain	48.975
DRR006524	Root Summer glycyrrhizin low producing strain	49.144
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.874
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.935

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	97.860
SRR2868004	Drought Stress (root)	103.514
SRR2967015	Control (root)	96.783

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.091
SRR9715740	Leaf	57.818
SRR9715741	Leaf	87.047
SRR9715739	Root	14.644
SRR9715742	Root	31.353
SRR9715743	Root	29.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.177
SRR8749028	MeJA induced 9h	82.742
SRR8749029	MeJA induced 9h	73.023
SRR8749030	Uninduced	174.493
SRR8749031	Uninduced	147.287
SRR8749032	Uninduced	186.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.419
SRR8400027	Control - Root	49.412