Gene detail

Gene detail information of Glyur000137s00013348.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32290.1	4.00E-104	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	XP_003603381.1	0	hypothetical protein MTR_3g106930 [Medicago truncatula]
trEMBL	tr\|G7JAJ3\|G7JAJ3_MEDTR	0	Core-2/I-branching enzyme {ECO:0000313\|EMBL:AES73632.1}

Sequence

Transcript Sequence

>Glyur000137s00013348.1
ATGCTATCGCCGAATCCATTTTCCCTTTTATGTGCACTCCTTCTATGCTTGCCTCTTGCCATAGTATTCACCACCACCACAACAACCACCACTCCCTCCTCCGCCGCAAACACCACCACCACCATCCCCGTTATTATCCCCAAACCAAACCCCACCCTGAGAACCACTTTCTTCAGCGGCACCAATGATACCCCACAGAATTACAACAAAACACGCGAACAACTGGNGGCGGAAGACGAATCGCTTTTCCTCGTTGCTAGCCACGCGAAGCGAAAAGCAACACGGCCCAGAAAAATAGCGTTCATGTTCTTAACAACAACCCCACTCGCATTCGCGCCACTATGGGAATCTTACTTCAACCAAACCCCAAAGAATCTCTTCAACATTTACGTCCACGCCGACCCCACATTCCGTTACGACCCTCCCTTTTCTGGCGTCTTCTCTAACCGTCTCATTCCCTCNAAACCAACCGCAAGGTATTCCCCCACGCTCACATCCGCGGCGCGTCGTTTACTCGCACGCGCCCTCATCCACGACCGTTCCAACTACATGTTCGTCCTTCTCTCCGCCTCTTGCATCCCCCTTCATTCCTTCAACTTCACCTACCGCACCCTCGTCAACTCCCGCAAGAGCTTCATCGAAATCCTCANCAACGAGGTTGGATCCTACGACCGATGGGCCGCGCGTGGAGACCAAGCGATGCTCCCTACGGTGAGGCTGGAGGACTTCCGCATTGGGTCCCAGTTCTGGGCGTTGACACGTAAGCACGCCAGGCTCGTCGTCGGCGACCGGAAGCTTTGGCCAAAATTCAACCTCCCGTGCTTGCGGTGGGACACGTGCTATCCGGAGGAGAATTACTTTCCTACCCTTCTCGGCATGTGGGACCCGAAGGGGTGCGTGCATGCCACGCTCACACACGTCGATTGGAAGGGGCGCCACGATGGACACCCTCGCACCTACGAGGCTGCCGAGGTTTGTCCTGAACTGATTCAGGCGTTGCGGAGGGATAGACCCCGGTACGGTAACGATAGCGGTAACGGCCAGAATANCGGCAGACGGCGACGGCGTGATCCGTTTTTGTTCGCGAGGAAATTCGCACCCGACGCTCTCCAACCGTTGATGGGGATAGCAGACGGCGTTATCTTTAGGGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00137	280618	281772	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000137s00013348.1	PF02485.16	Branch	99	334	4.10E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.064
SRR1783602	moderate drought stress	0.164
SRR1811619	moderate drought stress	0.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.118
DRR006520	Root Summer glycyrrhizin high producing strain	0.186
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.383
DRR006524	Root Summer glycyrrhizin low producing strain	0.383
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.483
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.193
SRR2868004	Drought Stress (root)	0.386
SRR2967015	Control (root)	0.676

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.273
SRR9715740	Leaf	0.243
SRR9715741	Leaf	0.089
SRR9715739	Root	3.173
SRR9715742	Root	1.475
SRR9715743	Root	1.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.527
SRR8749028	MeJA induced 9h	11.161
SRR8749029	MeJA induced 9h	6.870
SRR8749030	Uninduced	3.637
SRR8749031	Uninduced	2.334
SRR8749032	Uninduced	7.774

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.236
SRR8400027	Control - Root	0.388