Gene detail

Gene detail information of Glyur000137s00013343

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32260.1	3.00E-53	ATPase, F0 complex, subunit B/B', bacterial/chloroplast
NR	XP_004501345.1	8.90E-102	PREDICTED: ATP synthase subunit b', chloroplastic-like [Cicer arietinum]
COG	YP_001515249.1	3.00E-20	ATP synthase subunit B' [Acaryochloris marina MBIC11017]
Swissprot	tr\|P31853\|ATPX_SPIOL	7.00E-83	ATP synthase subunit b', chloroplastic (Precursor)
trEMBL	tr\|G7JAI2\|G7JAI2_MEDTR	5.00E-95	Uncharacterized protein {ECO:0000313\|EMBL:AFK46888.1}

Sequence

Transcript Sequence

>Glyur000137s00013343.1
ATGAATGGGTTGATCGTTCCTGACGAGAGTACCGGGCATTCTCTGACCAAGCAATTCTCTTCGCTGGTGATCGTCGATAGCGGCAATGTCGAAGTTGCAAACACAGCAACTGTTTCAGAACTCAAGCACGCAGTGGAAGCGGCTTTTGGTCACACGCCTCAGAAAGGGCCAGGGAAAATATCATGGCCACATGTTTGGGGGCAATTTTGTTTATGCTATGAAGGACAGAAGTTAGTTACAGAAATGGATTGTCTTAGGGATTATGGAATCAAAGATGGTGATCAGCTTTGTTTCGTGCGCCATGTGAACGATGTCTTGGCATTTGTAATGGAGCCCGATCATGCAAAATCTATGCCTTTGTGTTACTTAGTTGCTGCAGTTGGGCTCAAAACAGACCTGCAATGCGACGCTTTTTCAGTTGGGTTTACCAAAGCCAAAGCCGTTGCCATGGCCAACATGATCATGGCTTCCTCCAAATGCATGATTCCAGTGACCACCAATTCCCTTCCCCCGACACCCAAACTCCCCCCACTCCCCAAAGTCCCAGCCCTCAATCTTCCAAAACTGAAACCGAAATCCCTTTCCCTTCTGGGTGCGGCGGCGGCGGCGAGCTCACTGGCCTTTGCGCCGCCGTCACTGGCGGCAGAGATAGAGAAGGCGGCACTTTTCGACTTCAACCTGACACTTCCGATCATAATGGCGGAGTTCCTGGTGCTGATGGTGGCGCTGGACAAGGTATACTTCACCCCGCTGGGGAAGTTCATGGACGAGAGGGACGCTGCCATAAGGGAGAAGCTGAGCAGCGTAAAGGACACGTCGTCGGAGGTGAAGCAGTTGGAGGAGCAGGCCAACGCCGTCATGAAGGCGGCGCGCGCTGAGATATCGGCGGCGCTGAACAAGATGAAGAAGGAGACGCAGTTGGAGGTGGAGGAGAAGATCGCTGAGGGGAGGAAGAAGGTGGATGCGGAGTTGCAGGAGGCTCTCGCCAACTTGGAGAGGCAAAAGGAAGAGACCATTAAGTCCCTCGATTCCCAGATTGCCGCTCTCAGCCAGGACATTGTTAACAAGGTCCTCCCCACTCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00137	251151	254864	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015986 ATP synthesis coupled proton transport

cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)

molecular_function
GO:0015078 hydrogen ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000137s00013343.1	PF00430.13	ATP-synt_B	228	358	7.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.041
SRR1783600	control	37.633
SRR1783602	moderate drought stress	24.366
SRR1811619	moderate drought stress	24.388

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.361
DRR006520	Root Summer glycyrrhizin high producing strain	26.510
DRR006521	Root Winter glycyrrhizin high producing strain	13.891
DRR006522	Root Winter glycyrrhizin high producing strain	13.404
DRR006523	Root Summer glycyrrhizin low producing strain	26.748
DRR006524	Root Summer glycyrrhizin low producing strain	27.239
DRR006525	Leaf Summer glycyrrhizin high producing strain	1824.504
DRR006526	Leaf Summer glycyrrhizin high producing strain	1877.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.171
SRR2868004	Drought Stress (root)	51.706
SRR2967015	Control (root)	39.263

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	979.777
SRR9715740	Leaf	1033.729
SRR9715741	Leaf	704.136
SRR9715739	Root	50.666
SRR9715742	Root	26.957
SRR9715743	Root	32.370

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.120
SRR8749028	MeJA induced 9h	38.168
SRR8749029	MeJA induced 9h	47.292
SRR8749030	Uninduced	17.101
SRR8749031	Uninduced	6.145
SRR8749032	Uninduced	15.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.303
SRR8400027	Control - Root	35.413