Gene detail information of Glyur000137s00013334 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11100.1 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_004501351.1 | 0 | PREDICTED: synaptotagmin-4-like [Cicer arietinum] |
| Swissprot | tr|A0JJX5|SYT4_ARATH | 0 | Synaptotagmin-4 |
| trEMBL | tr|I1K8T0|I1K8T0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G07030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00137 | 171488 | 176900 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000137s00013334.1 | PF00168.25 | C2 | 275 | 315 | 8.90E-06 |
| Glyur000137s00013334.1 | PF00168.25 | C2 | 432 | 513 | 8.30E-23 |
| Glyur000137s00013334.2 | PF00168.25 | C2 | 259 | 299 | 8.60E-06 |
| Glyur000137s00013334.2 | PF00168.25 | C2 | 416 | 497 | 7.90E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.205 |
| SRR1783600 | control | 1.226 |
| SRR1783602 | moderate drought stress | 1.639 |
| SRR1811619 | moderate drought stress | 1.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.251 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.188 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.771 |
| SRR2868004 | Drought Stress (root) | 4.277 |
| SRR2967015 | Control (root) | 4.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.226 |
| SRR9715740 | Leaf | 0.202 |
| SRR9715741 | Leaf | 0.131 |
| SRR9715739 | Root | 0.105 |
| SRR9715742 | Root | 1.686 |
| SRR9715743 | Root | 1.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.068 |
| SRR8749028 | MeJA induced 9h | 0.035 |
| SRR8749029 | MeJA induced 9h | 0.065 |
| SRR8749030 | Uninduced | 0.357 |
| SRR8749031 | Uninduced | 0.027 |
| SRR8749032 | Uninduced | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.484 |
| SRR8400027 | Control - Root | 11.019 |