Gene detail

Gene detail information of Glyur000137s00013327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32060.1	8.00E-148	calcium-binding EF hand family protein
NR	XP_006581342.1	0	PREDICTED: calcium uptake protein 1, mitochondrial-like [Glycine max]
trEMBL	tr\|K7KTG4\|K7KTG4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G06960.2}

Sequence

Transcript Sequence

>Glyur000137s00013327.1
CATGCCATTGCCATGTCTTTCTTTTCCACTCTCCGTAGATCCTCGTTGTTCACCCAACGCTTCCGGAGCCACTTTTCGACTTCACAACCTCCTTCCTCTGCACCACCGTTACCGAATGCTAACCCACGGCGGCCCAATCCAAAATGGGCTTCGGCCTTTGTTGTTGTGGGCTCTGCTCTTGCCCTTCTCTATTACTTCTCCTCCACACCCAATTCCCACAACGATTCCCCTCNCACTAGTTCTTCTTCTCCGCCGTTGTTTAGAAAATTATCCCTTCCTGAAATAACACTTAATTATATTTTATTTAATTTAATTGCAGATGCGTACAGAAGTAAGGTTTTCTTCAACTATGAGAAGCGCATTCGGTTGCATAGTCCACCGGAAAAGGTTTTTGAATACTTTGCATCATGTCGTACTTCAGAAGGGGAACTTCTTATGAAGCCATCGGACCTAATGCGAGCGGTTGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGACGGTTACTTGAAAGGCGAAAGAAGTCCTGGCCAGTTATGCTGTCCTCCTTCANAATTCTTTATGCTTTTTGATGTAGACAGTGATGGGCTTATATCTTTCAGAGAGTATATATTTTTGGTAACACTGCTTAGCATCCCAGAGTCAAGCTTTTCTGCAGCATTTAAAATGTTTGACAAGGATAATGATGGGGAGATAGATAAAGAAGAATTCAAAGAAGTGATGGCATCGATGCGATCTCATAGCAGACAAGCTGTTCACCAAAGGGATGGTCGACGAAGTGGCTTAAAGGCCAATGGTTCTGTAGAAAATGGAAGGCTGGTGGAATATTTATTTGGCAAAGATGGAAAAGGACGCCTCAGACATGATAAATTCGTGCAGTTTATAAGGGATCTGCATGATGAAATTGTGAGGCTGGAGTTTGTTCACTATGACTACAAATCTCGAAAAACCATATCAGCCAAGGATTTTGCACACTCCATAGTTGCCTCTGCTGACGTGAGTCATCTGGGCAGGTTGCTCGAACGGGTTGATGAATTGAACAATAATCCACGGTTGAGGAATGTACAGATCACTTTTGAGGAGTTCAAAATTTTTGCAGAGTTGCGGAAAAAATTACCACCACTTTCATTGGCCCTTTTCAGTTTTGCAAAAGTACATGACTTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCAAGTGTCTGTGGTTTATCTCTCTCTGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGACACAAGTGGGGATGGGAACCTAAGTTCAGATGAGTTTATTAGAGTGCTACACAAGCGAGAAAGAGATATTGCTCAACCTGTGGAGACNGGAATTATGGGTTTCTTGTCATGCTGCTGGAACTGTACCAACACCACCCCATTTTCCCGGTTGTTTTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00137	133228	137375	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000137s00013327.1	PF13202.1	EF-hand_5	188	205	0.059
Glyur000137s00013327.1	PF00036.27	EF-hand_1	221	246	7.20E-09
Glyur000137s00013327.1	PF13833.1	EF-hand_8	389	437	5.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.981
SRR1783600	control	2.750
SRR1783602	moderate drought stress	1.387
SRR1811619	moderate drought stress	1.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.910
DRR006520	Root Summer glycyrrhizin high producing strain	1.919
DRR006521	Root Winter glycyrrhizin high producing strain	0.643
DRR006522	Root Winter glycyrrhizin high producing strain	0.703
DRR006523	Root Summer glycyrrhizin low producing strain	1.018
DRR006524	Root Summer glycyrrhizin low producing strain	1.133
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.154

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.759
SRR2868004	Drought Stress (root)	0.735
SRR2967015	Control (root)	1.357

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.190
SRR9715740	Leaf	0.131
SRR9715741	Leaf	0.162
SRR9715739	Root	0.119
SRR9715742	Root	0.859
SRR9715743	Root	0.950

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.053
SRR8749028	MeJA induced 9h	1.162
SRR8749029	MeJA induced 9h	0.999
SRR8749030	Uninduced	0.494
SRR8749031	Uninduced	0.041
SRR8749032	Uninduced	0.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.617
SRR8400027	Control - Root	2.907