Gene detail

Gene detail information of Glyur000137s00013317.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25220.2	4.00E-134	KNOTTED1-like homeobox gene 3
NR	XP_007136984.1	0	hypothetical protein PHAVU_009G090500g [Phaseolus vulgaris]
Swissprot	tr\|O04136\|KNAP3_MALDO	0	Homeobox protein knotted-1-like 3
trEMBL	tr\|V7AWI0\|V7AWI0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08978.1}

Sequence

Transcript Sequence

>Glyur000137s00013317.1
CACCCTCACCGGGAAACCACTGTTAGAAATAGAAAAACCGCCTCATAGCAATTTCTCTCCAATCTCCTTTCTAACCACTAATAGACATATATATAGGTTCACACTTCACNGTAACTCACAACAGCCCCTGTCTGTTTCCCTCGCTACTCCTACTTCCCTACTCATAGCCTCTTCCTTTCCCTCAGTTCCCTCCTCTGTCCAAAAACAAAATACAACACCATTTCTCTTCATTTTCCCCCGGGAAGTCCCACTACTGCTACACACGGACCAAACACACACTTTTTCTCTCCAACCTTCTTCAGCTTCGCTTCTCCACAGCTAATTAACCTTTCCTTCAGCATGAACAGATATAAACTTACCTGCTAGCTAGGTTGTACATACAGCGAGTCACTCTGGTTAAATTTTATTAATATGGCGTACCATAACAACCACCACCACCACCACCACATGTCCCAAGACCTCCCACTCCACCATTTCACNGAGCAACAACACCATAACAACCAGCCTCTCACTGACAACTCCATATTGGAGGAACAGCTAGGTGCTTCCCCAGACCCCTCCACCAAACCTAACTCCGATCCTAACCACCCACTCCAAACCGCTCCCAATTGGCTCAACAACGCCCTCCTTCGCACCCACTTCCCCGACAACACCACCACCAACAACAACAATAACAATAGCAACAACCACCAAGACCACCACGACAACTCCTCCAACACCAATAGCAGCAACAAGTTCCTCAACCTCCACAACGCCGGCGGCGCTGCCGACTCCCAATGCTCCGGCGGCCAATGGCTCGCTCGACCGGTCCTCCACCGCAACCACAGCGAGGTCATCGACGCCGGCGGCGAGAAGGGCGAGGCGGAGGAGGGGGCGATGAACTGGCAGAATGCGAGGCAGAAGGCGGAGATTCTGTCGCACCCGCTGTACGAACAGCTTCTGTCTGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATCGACGCTCAGCTGGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGTCTAGTTGGGGATGATAAGGAACTCGACCACTTCATGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAGCTCCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCCGGGGAAGGTACAGGGGCAACAATGTCTGATGACGAAGAAGACCAAGTTGACAGTGATGCAAATCTGTTTGATGGTGGTTTGGACGGTTCAGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCGGTCCTTAAAGCCTGGTGGCAATCACACTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACGGGTTTGCAATTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGTCTTAAAGAGCAAGCGCAAGAGGTGATAATAGTGCTCAACGTTACATGTAAATTAATGGAGGAAAACTCAGAAACAATCCCCGACATGTATTAGTTCTTTCTCTGAGGTCTGTCACAATATGCATGGCATCTGATCCAAGGAAAATCAATGAGAGGGTGAAAAAATTCACATCAATCACATTTTGCTTCGTTCCAGAGAACAGGGTTAAAACAGAGATGAGAGGACGCTTGAAGGCCCGTAGTACCTGCCATTCAACAAAAACTTGAATATATTTTTAGTTTAAATATAAGTCGATTTTTAAAGCAGTCCCTCTTTAATTTGTTTTTGTTTTTAATCTTTATTATATTTAACAAAATAGTGTGCTTTTTTTTTGACAGAAAATAGTGTGCTTTTTATTTTTCTCATTTAAGTGTTTTTAGGGACTGAAAGCATATAGTTTTTATTTTTATTTTTAAGAAATAAAAACAACACAAATTAAAGAGGGAAATTCAAGTATCTAGCACATGTGCCCGACCTTGTTTCATAAATTAGAGTGGNATTAATTTTGAGAAACGTCATAATTTCAAGTATTGAAATAAAAACATAATTAAGCTTGTATATAACAAAATCAGGGAGTTCAATTAGGAATNATATACCGAAACCAATTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00137	62267	66328	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000137s00013317.1	PF03790.8	KNOX1	164	205	4.90E-18
Glyur000137s00013317.1	PF03791.8	KNOX2	216	267	2.80E-22
Glyur000137s00013317.1	PF05920.6	Homeobox_KN	353	392	2.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.038
SRR1783600	control	7.181
SRR1783602	moderate drought stress	9.318
SRR1811619	moderate drought stress	8.957

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.235
DRR006520	Root Summer glycyrrhizin high producing strain	7.177
DRR006521	Root Winter glycyrrhizin high producing strain	14.579
DRR006522	Root Winter glycyrrhizin high producing strain	13.990
DRR006523	Root Summer glycyrrhizin low producing strain	13.330
DRR006524	Root Summer glycyrrhizin low producing strain	13.314
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.093

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.884
SRR2868004	Drought Stress (root)	9.193
SRR2967015	Control (root)	8.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.182
SRR9715740	Leaf	18.673
SRR9715741	Leaf	31.438
SRR9715739	Root	8.527
SRR9715742	Root	42.007
SRR9715743	Root	34.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.959
SRR8749028	MeJA induced 9h	124.234
SRR8749029	MeJA induced 9h	55.362
SRR8749030	Uninduced	22.756
SRR8749031	Uninduced	12.862
SRR8749032	Uninduced	17.673

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.509
SRR8400027	Control - Root	25.103