Gene detail information of Glyur000136s00007956 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64330.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003545709.1 | 0 | PREDICTED: root phototropism protein 3-like [Glycine max] |
| Swissprot | tr|Q9FMF5|RPT3_ARATH | 0 | Root phototropism protein 3 |
| trEMBL | tr|I1MDZ4|I1MDZ4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G06190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 288849 | 293856 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000136s00007956.1 | PF03000.9 | NPH3 | 262 | 553 | 4.20E-99 |
| Glyur000136s00007956.2 | PF03000.9 | NPH3 | 245 | 536 | 3.90E-99 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.848 |
| SRR1783600 | control | 2.880 |
| SRR1783602 | moderate drought stress | 3.429 |
| SRR1811619 | moderate drought stress | 3.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.140 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.500 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.278 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.238 |
| SRR2868004 | Drought Stress (root) | 8.068 |
| SRR2967015 | Control (root) | 5.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.120 |
| SRR9715740 | Leaf | 17.377 |
| SRR9715741 | Leaf | 15.914 |
| SRR9715739 | Root | 0.623 |
| SRR9715742 | Root | 4.949 |
| SRR9715743 | Root | 3.443 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.238 |
| SRR8749028 | MeJA induced 9h | 0.808 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 0.693 |
| SRR8749031 | Uninduced | 0.462 |
| SRR8749032 | Uninduced | 1.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.424 |
| SRR8400027 | Control - Root | 16.828 |