Gene detail

Gene detail information of Glyur000136s00007955.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01320.1	0	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NR	KHN26768.1	0	Pyruvate decarboxylase isozyme 2 [Glycine soja]
COG	YP_007568556.1	3.00E-149	Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprot	tr\|A2Y5L9\|PDC1_ORYSI	0	Pyruvate decarboxylase 1
trEMBL	tr\|I1KUA8\|I1KUA8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G18830.1}

Sequence

Transcript Sequence

>Glyur000136s00007955.1
ATGATAAGCAACAAAACCTTCAAGCCTGTTGCCAACCACATTGGCTTCCCAAGTGTTGAAGCCAATGGTATCCATAAGCCTTTGTTGGGTGAAAGTAATAATAATAAGAACACCCTTGGCCACCATCTTGCACGACGTCTAGTTGAAATTGGCATCAATGATGTGTTTGCTGTCCCTGGAGACTCAAACCTTACCCTTCTTGATTATTTGGTGGCTGAACCTCAGCTTAACCTCATTGGGTGTTGTAATGAGCTCAATACTGGCTATGCCGCTGATGGGTATGCCAGATATAAAGGTGTTGGTGCATGTGTTGTTACTTTCACTGTTGGTGGCCTTAGCATCCTCAATGCTATTGCTGGTGCTTACAGTGAGGATCTTCCAATCATTTGCATTGCAGTAGTAAAGAACTTGGATGATGCACATGAACAGATTGACACTGCCATTGCAACTGCTCTGAGGGAAAGNAAGCCTGTCTATATTAGCATAGCCTGCAACTTGTTTGGCATCCCTCACCCTTCCTTCATTGAGCAGCATGTNCCTTTCTATTTGACTCCCACGTTGACCAATCAAAAGTGTTTGGAAATTGCGGTGGAAGCAGCAGCAAAGTTCTTGAATAAGGCAGTGAAACCAGTGATGGTGGGAGGGCCAAGGTTGCGGATGGGAAAGGCTTGTGATGCTTTCATGGAGATGGCAGATGCTTCAGGTTATGCCATAGCAACCATGCCTAANGCAAAAGGGATGGTGTGGGAGCACCACCCCAACTTCATTGGCACTTACTGGGGAGTGGCCAGCACTTCCTTTTGTGCAGAGATTGTGGAATCTGCTGATGCCTATCTGTTTGCTGGCCCAATATTCAATGACANTGTCTCTATGGGGTACTCACTGCTGCTAAAGAAGGAAAAGACAGTTATGGTGCTCCCTAACCGAGTTGTTATTGGGAATGGNCCTTCCTTTGGGTGTGTTTCAATGAAGGACTTCTTTAAAGCGCTTACAAAAAGGCTCAAACGCAACACANCTGCTACTGAGAATTACCAAAGAATACACATCCCAGATGGCCTCCCTCTTCACTCTAAGCCAAAGGAGGCATTAAGGGTCAATGTTTTATTCAGACACATACAGAACATGTTGTCCTGTGACACCACTGTGATATCTGAAANTGGAGACGCTTGGTTTATTTGCCAGAAGTTGAAACTGCCACACGGTTGCGGGTATGAATGTCAGATGCAGTATGCATCAATTGGTTGGTCAGTTGGTGCAACACTTGGTTATGCGCAAGCTGCTCCCCAAAAGCGAGTGATTACATGTGTTGGCGATGGTAGCTTCCAGATGACAGCACAGGAAGTCTCNACAATGTTGCGGTGTGGACAGAATGGCATCATCTTTCTAATTAACAATGGTGGATATACTACAGAGGTAGAAATCCATGACGGGCCTTACAATGTGATAAAAAACTGGGACTATACNGGAATGGTAGAAACAATAGATAATGGTGAAGGCAAGTGCTGGACTGCCAAGGTTCACTGTGAAGAAGAGCTAATAGAAGCAATACAGACAGCAATGGAAAGTAAAAAGAATTGCTTATGCNTCATTGAAGTGATTGTGCACAGAGATGATTCAAGCAAGGAAATGCTTCAGTTTGGATGCAGGCTTATGGCTGCCAATGGCCGCCCGCCTATGGATCACTAAGTTTGCAAATATCTAAAAATATTATTCTGATAACGAAGTGTAAGNTGTAAGATGGTGGGGAAAAAATGCTAGTCACAGTTAATCAATGGAGAGAAAAGAAATAGAANATAATAATAAAATAAAAAAGGATATCCTACAAGGTTTATTGGATCTATGCAGATGCAACATTCACATCAATATTCAATAGTGTTTAATCAAGTTAATACTAGTGTGATTCAATGATTCTGATAGGGATCCAATGGCTAAGAAGAAAAGATTTCATTATGTCTCGATTCTGCTTATGTTTCGATTCTGGATGTAACCATTCTAATTTTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	284153	287067	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01568	PDC, pdc	EC:4.1.1.1	Glycolysis / Gluconeogenesis	map00010

Gene Ontology

molecular_function

GO:0000287 magnesium ion binding

GO:0003824 catalytic activity

GO:0030976 thiamine pyrophosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007955.1	PF02776.13	TPP_enzyme_N	38	141	2.40E-25
Glyur000136s00007955.1	PF00205.17	TPP_enzyme_M	197	305	2.80E-15
Glyur000136s00007955.1	PF02775.16	TPP_enzyme_C	409	527	1.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.062
SRR1783600	control	0.043
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.056
DRR006522	Root Winter glycyrrhizin high producing strain	0.054
DRR006523	Root Summer glycyrrhizin low producing strain	0.055
DRR006524	Root Summer glycyrrhizin low producing strain	0.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.087
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.222

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.299
SRR2868004	Drought Stress (root)	0.125
SRR2967015	Control (root)	0.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.957
SRR9715740	Leaf	6.896
SRR9715741	Leaf	2.340
SRR9715739	Root	0.076
SRR9715742	Root	0.029
SRR9715743	Root	0.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.047
SRR8749028	MeJA induced 9h	0.236
SRR8749029	MeJA induced 9h	0.269
SRR8749030	Uninduced	0.122
SRR8749031	Uninduced	0.205
SRR8749032	Uninduced	0.446

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.302
SRR8400027	Control - Root	0.852