Gene detail

Gene detail information of Glyur000136s00007951

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57150.1	0	homologue of NAP57
NR	XP_004505757.1	0	PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cicer arietinum]
COG	YP_004004442.1	3.00E-92	tRNA pseudouridine synthase b [Methanothermus fervidus DSM 2088]
Swissprot	tr\|Q9LD90\|CBF5_ARATH	0	H/ACA ribonucleoprotein complex subunit 4
trEMBL	tr\|A0A072ULA4\|A0A072ULA4_MEDTR	0	Centromere/microtubule-binding protein {ECO:0000313\|EMBL:KEH30544.1}

Sequence

Transcript Sequence

>Glyur000136s00007951.1
ATGTCGATGTCTCAGTCCGAAACCAAGAAGAAGAAGCACCGCAACAGCACCAANAAACATGAAGAAGAGCAAACAACAGAGAAGCAGCAGAACAACAAGGAGGAGTTCATGATCAAACCGGAGAAGGTAACAGCGTCAATCGANACCTCCCAATGGCCAATACTCCTGAAGAACTACGAGCGCCTCAACGTCCGCACCGGCCACTACACCCCTCTCCCCGCAGGTTGTTCCCCACTGAAGCGTCCCATCGAGGAGTACCTCAAGTACGGTGTCATCAACCTCGACAAGCCCGCAAACCCTTCCTCCCACGAGGTTGTCGCATGGATCAAGCGCATCCTACGTGTNGAGAAAACCGGTCACAGCGGTACCCTCGACCCAAAAGTCACCGGCAACCTCATCGTNTGCATCGACAGGGCCACGCGCCTCGTCAAGTCCCAACAGGGTGCCGGAAAAGAGTACGTCTGTGTCGCCCGCCTCCACTCCTCCGTCCCCGACGTCTCCAAAGTCGCACGCGCCCTCGAAACCCTCACCGGCGCTGTATTCCAGCGCCCGCCTCTCATCTCCGCCGTCAAGCGCCAGCTCAGGATTAGAACCATTTACGAGAGTAAGCTCCTTGAGTATGATGCCGATAGGCACTTGGTTGTTTTCTGGATTTCATGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTTCTCGGGGTTGGTGGCCACATGCAGGAGCTTAGGAGGGTTAGGTCTGGTATCATGGGTGAGAAGGATAACATGGTTTCCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATCCCTGGGCTGCTCAGGTTTGAGAATGACATTGATGTTGGGGAGGAGGTTGTGCTCATGACCACAAAAGGGGAAGCTATTGCCCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTGTGGTCGCCAAGATCAAGAGGGTGGTCATGGATCGCGATACTTATCCCAGNAAATGGGGTTTGGGACCTAGGGCTTCGATGAAGAAGAGACTGATTGCTGAGGGGAAGCTGGATAAGCATGGGAAGCCGAATCCAAACACTCCACAGGAGTGGATGAGGAATCTGGTTTTGCCCACTGGTGGGGATAGCATGATTGCAGGGATGGCTGCTGCTCCTGAGCNAGAGGAGGCAAAGAAGAAAGAGGCTGGTGCGGAAGAGGGCGAGAAGGTTAAGAGGGATGGAGATGGGGAAGGGCGTAAGAGGAAGAAACATGAAAGCACTGATAGCCCTGCTGCTGCCCTTCCTGCTAAGAAGGTGAAGGTGGATGCGGTTGAAGAGGTTGTTGAGAAAGAGGAAAAGGTGAAGGTGAAGAAAGTAAACGAAGCGGCTGTGGAGGTTGAGGTTGAGAAGAAAGAGAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGATGTGGCATCTTCGGATGAGGAGAAATCTGAAAAGAAGAAGGAGAAGAAGAAGAAGCACAAGGAAAAGGTTGAAGATGGTTCGCCCGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAGAAGGACAAAGATGCTGAGGGTAATGCTGCTGAGATTAGTAACGGAAAGGATTGCAGTAATGCTGATAGGAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	265356	267176	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11131	DKC1, NOLA4, CBF5	EC:5.4.99.-	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0006396 RNA processing

GO:0009451 RNA modification

molecular_function

GO:0003723 RNA binding

GO:0009982 pseudouridine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007951.1	PF08068.7	DKCLD	49	106	2.60E-31
Glyur000136s00007951.1	PF01509.13	TruB_N	110	226	1.30E-20
Glyur000136s00007951.1	PF01472.15	PUA	297	369	7.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.921
SRR1783600	control	65.682
SRR1783602	moderate drought stress	86.053
SRR1811619	moderate drought stress	82.530

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.951
DRR006520	Root Summer glycyrrhizin high producing strain	96.767
DRR006521	Root Winter glycyrrhizin high producing strain	28.160
DRR006522	Root Winter glycyrrhizin high producing strain	27.589
DRR006523	Root Summer glycyrrhizin low producing strain	109.818
DRR006524	Root Summer glycyrrhizin low producing strain	104.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.560
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.722

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	110.527
SRR2868004	Drought Stress (root)	73.705
SRR2967015	Control (root)	70.539

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.317
SRR9715740	Leaf	35.275
SRR9715741	Leaf	21.984
SRR9715739	Root	7.856
SRR9715742	Root	69.045
SRR9715743	Root	57.515

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	184.133
SRR8749028	MeJA induced 9h	53.718
SRR8749029	MeJA induced 9h	79.085
SRR8749030	Uninduced	7.936
SRR8749031	Uninduced	2.430
SRR8749032	Uninduced	7.632

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.274
SRR8400027	Control - Root	60.968