Gene detail

Gene detail information of Glyur000136s00007942

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64290.1	0	dicarboxylate transport 2.1
NR	XP_004485598.1	0	PREDICTED: dicarboxylate transporter 2.1, chloroplastic-like [Cicer arietinum]
COG	NP_348217.1	3.00E-147	2-oxoglutarate/malate translocator [Clostridium acetobutylicum ATCC 824]
Swissprot	tr\|Q9FMF7\|DIT21_ARATH	0	Dicarboxylate transporter 2.1, chloroplastic (Precursor)
trEMBL	tr\|G7IPL2\|G7IPL2_MEDTR	0	2-oxoglutarate/malate translocator {ECO:0000313\|EMBL:AES63485.1}

Sequence

Transcript Sequence

>Glyur000136s00007942.1
AAAAAAAAGCAAATGAAAAGCCACCCCAGAAATAAAAGAGAGAATAACTAACTGGTTACAAAAAATACAAACAAAATGTGGCGAACAAGTCTCCTCAGATTTCCCATCTCACATGAAGACACTCGCTGACATTGGTCACTCCGCATAGAAAATACCCAACAAAATCAATATATTACACACGACACAAGCTTCAAGCTCAAACCAAAGCCTCTCTCTCTCTCTCTCTCCATCTCCCCAATCTCGTTCGTTCTTCATTCGTTTCTTTTTATCTGATCACAACACAAGTATCAGCGTCACTCGTTTCTGCGCCAATGGAGAGCTTAGCACTCTACTCGCTCTCCACATCCTCCTTCTCTCGCTCTCCCTCACTCCATCACCACCGTCCACGCCCCATCTTCAGATCCCTTCCATTGAATCCCACTCCACGCTCAACCCCATCTCTCAAATCGCCCATAGTCTCTCACCCTCTCCCCTTTCCNTCCAAAGTTTCCACCTTCAACCCTTTCTCAAGACCCCACATCACCCCAATTCGAGCTTCTTCAAAATCCCCACCACCCATTCTTCAGGGCGCAAAGCCCGTCCCTTTCGTAATCTCGGTATGCATAGGTCTCATAGTTCGTTTCCTGGTTCCGAAACCAGTGGAAGTTACCCCTCAGGCGTGGCAATTGCTCTCGATTTTCCTTTCCACCATCGCGGGCCTGGTTCTGAGCCCATTACCGGTGGGAGCGTGGGCTTTTCTGGGACTGACGACAGCGGTGGTGACGAATACTCTGAGCTTTACGGCGGCATTCAGTGCTTTCACGAACGAGGTGATTTGGTTGATCGTGATCTCGTTCTTCTTTGCTCGTGGGTTTGTGAAGACTGGGTTGGGGGATAGGATTGCNACCTACTTCGTTAAATGGATGGGGAAGAGCACGCTGGGACTCTCTTATGGGTTGACTTTCAGTGAGGTGCTTATTGCACCGGCAATGCCAAGTACCACCGCCAGAGCCGGTGGTGTCTTCTTGCCAATTATTAAGTCGCTTTCCCTCTCTGCTGGGAGTGAACCCGGAAATCCCACTTCTAAGAGGCTTGGGGCTTATCTTGTTCAGAACCAATTTCAGTCTGCTGGTAACTCCAGTGCTCTTTTCCTAACTGCTGCAGCTCAAAATCTGCTTTGTATTAAATTAGCAGAGGAGCTTGGGGTGATAGTTTCAAACCCTTGGGTTACTTGGTTTAAGGCAGCTAGTTTGCCTGCACTCNTTTGTCTTCTTGCTACTCCTTTGATTTTATACAAGCTCTATCCCCCTGAAATTAAAGACACACCGGAGGCACCTGCCTTGGCTGCAAAGAAACTGGAAAATATGGGCCCTGTTACTCAAAATGAATGGATCATGGTTGCCACAATGCTTCTTGCAGTCTCCTTGTGGATCTTTGGAGAGACTCTTGGCATAGCAAGTGCTGTAACTGCAATGCTTGGTTTATCNGTACTCCTCATATTAGGAGTCCTCGACTGGAATGACTGCTTGAATGAAAAATCAGCATGGGACACCTTGGCTTGGTTTGCCATTCTTGTAGGCATGGCAGGCCAGTTGACAAACCTCGGTATTGTGAGCTGGATGTCCGATTGTGTGGCCAACAACCTCCGGTCATTCTCCTTGAGCTGGCCAGTTTCACTAGCTGTTCTTCAGGCAGCTTATTTCTTCATCCACTACCTTTTTGCAAGCCAGACTGGGCATGTGGGGGCTTTATACTCTGCATTTCTTGCCATGCATAGGGCAGCTGGCGTTCCCAGTGTTCTGGCGGCACTTGCTTTAGGTTATAATACAAATCTTTTTGGNGCAATAACACACTATAGCAGCGGTCAAGCTGCTGTATACTATGGAGCTGGTTATGTAGACCTTCCGGACATATTCAAAGTGGGGTTCATTATGGCCTTCATTAATGCTATCATCTGGGGAGGTGTTGGCTCTTTATGGTGGAAATTTTTAGGCTTGTATTGATTGATTTTCCATTTCCTTGTAAGTAAATTAATATAGCAGTTTAGTTTTCTCTGTTTCTTTTTCCCGGCCCAACGATAAGGTCCTTCATTTGAGGACAGTTGAGTTCTTCATTTTAATTTAACANGAAGCTTTTTCCCCCTTTCGACATACTTATTTGTTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	236921	240799	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007942.1	PF00939.14	Na_sulph_symp	92	555	1.00E-140

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.797
SRR1783600	control	23.823
SRR1783602	moderate drought stress	14.300
SRR1811619	moderate drought stress	14.259

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.837
DRR006520	Root Summer glycyrrhizin high producing strain	18.516
DRR006521	Root Winter glycyrrhizin high producing strain	1.570
DRR006522	Root Winter glycyrrhizin high producing strain	1.562
DRR006523	Root Summer glycyrrhizin low producing strain	9.478
DRR006524	Root Summer glycyrrhizin low producing strain	9.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.239
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.825

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.141
SRR2868004	Drought Stress (root)	19.974
SRR2967015	Control (root)	17.425

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.491
SRR9715740	Leaf	65.781
SRR9715741	Leaf	52.710
SRR9715739	Root	17.449
SRR9715742	Root	20.073
SRR9715743	Root	17.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.328
SRR8749028	MeJA induced 9h	5.303
SRR8749029	MeJA induced 9h	3.428
SRR8749030	Uninduced	3.814
SRR8749031	Uninduced	0.639
SRR8749032	Uninduced	0.703

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.383
SRR8400027	Control - Root	20.577