Gene detail information of Glyur000136s00007936 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65260.1 | 2.00E-74 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | NP_001239931.1 | 1.23E-127 | uncharacterized protein LOC100791351 [Glycine max] |
| COG | YP_007066418.1 | 6.00E-10 | RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q9FJN9|PABN2_ARATH | 5.00E-103 | Polyadenylate-binding protein 2 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|C6TN06|C6TN06_SOYBN | 5.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G06030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 203446 | 207078 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000136s00007936.1 | PF00076.17 | RRM_1 | 70 | 138 | 2.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 127.331 |
| SRR1783600 | control | 128.482 |
| SRR1783602 | moderate drought stress | 266.151 |
| SRR1811619 | moderate drought stress | 263.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 141.236 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 139.068 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 99.826 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 96.380 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 216.912 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 216.646 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.545 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 84.308 |
| SRR2868004 | Drought Stress (root) | 87.367 |
| SRR2967015 | Control (root) | 86.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.131 |
| SRR9715740 | Leaf | 53.678 |
| SRR9715741 | Leaf | 55.027 |
| SRR9715739 | Root | 144.008 |
| SRR9715742 | Root | 83.370 |
| SRR9715743 | Root | 96.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 126.649 |
| SRR8749028 | MeJA induced 9h | 92.032 |
| SRR8749029 | MeJA induced 9h | 113.448 |
| SRR8749030 | Uninduced | 82.086 |
| SRR8749031 | Uninduced | 46.448 |
| SRR8749032 | Uninduced | 106.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 114.047 |
| SRR8400027 | Control - Root | 109.281 |