Gene detail

Gene detail information of Glyur000136s00007934.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase
NR	XP_003545685.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic [Glycine max]
COG	YP_420582.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Magnetospirillum magneticum AMB-1]
Swissprot	tr\|Q00218\|AROG_ARATH	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor)
trEMBL	tr\|G7IPJ9\|G7IPJ9_MEDTR	Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313\|EMBL:AES63472.1}

Sequence

Transcript Sequence

>Glyur000136s00007934.1
GAATTTTTACACGAATGGAGTTTGTGATTTTTGTCCAGTCATTTTTTACACTTTTTTCATTTTTTAATAACATATATATATAAATTGTCAGACTCAGAATCAGATATTTCTCTCACTCTCTCTCTCTCTCTCTCTCGTCTATATCATCGCTCTCTGTGTTGTGGATTGATTGAACAATGGCTGTGGCGTGTTCCTCCTCCCAGATCGTGATCGGCCTCGCACGTTCCCGGTCAACGCCTCTGCTGCAACGACGCAGATCCGTCGTGGTAGCGAGTTCAGCCGAGGCATCGAAGTCAACGGCGGCGACGAGTGCCCCGATATCGAGCAGCAGCNCTAATTGGAGGGTGGACAGTTGGAGGGGGAAGAAGGCGCTGCAGCTACCGGAGTACCCAGATCAGAATGAGGTGGATCAAGTCCTCGAAACCCTATCCTCTTTCCCACCCATCGTCTTCGCCGGTGAGGCCAGGAGCCTCGAGGAGAAACTCGCTCAGGCCTCCATGGGCAACGCTTTTCTCCTTCAGGGTGGGGATTGTGCTGAGAGCTTCAAGGAATTCAATGCCAACAACATCCGTGACACCTTCCGTCTCATCCTTCAAATGGGTGTCGTCCTTATGTTCGGTGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGTCAGTTTGCAAAGCCAAGATCAGATCAGTTTGAGGAGAAAAATGGAGTGAAGCTGCCCAGTTACAGGGGTGACAATGTGAATGGGGACGCATTTGATGCAGCATCTAGAATTCCAGATCCACAGAGGATGATAAGAGCCTACTGCCAGTCTGTGGCTACTCTTAACCTCTTGCGCGCGTTTGCCACNGGAGGTTATGCTGCCATGCAAAGGGTCAACCAATGGAATCTTGATTTCATGGAGCGTAGTGAACAGGGAGACAGGTACCGTGAATTGGCTCATCGAGTGGATGAGGCTCTTGGCTTTATGAGTGCTTCTGGGCTCACATCTGAGCATCCAATCATGACTACAACAGACTTTTGGACCTCCCATGAGTGTTTGCTTCTCCCTTATGAACAATCACTTACTAGGGAGGATTCTACTTCTGGGCTTCATTATGATTGCTCAGCTCACATGCTATGGGTTGGGGAACGTACCCGCCAACTTGATGGTGCTCATGTTGAATTCTTGAGAGGAGTTGCTAATCCACTTGGCATCAAGGTGAGTGATAAGATGGTTCCAGATGAGCTTGTTAGGCTGATAGATATCCTCAACCCTAAAAACAAGCCTGGAAGAATCACAGTAATTGNAAGAATGGGAGCTGAGAACATGCGGGTGAAGCTTCCACATCTTATCAGGGCAGTTCGCAGAGCTGGTCAAATTGTCACTTGGGTTAGTGATCCCATGCATGGGAACACCATTAAAGCTCCATCTGGACTTAAAACCCGCTCTTTNGATTCAATAAGGGCNGAGTTGAGGGCATTCTTTGATGTCCATGACCACGAAGGAAGCTATCCAGGAGGGGTTCATTTGGAAATGACTGGGCAGAACGTGACAGAATGTGTTGGAGGCTCAAGGACTATTACTTTTGATGACTTGAGCTCACGCTACCACACTCATTGTGATCCAAGGCTTAATGCTTCTCAATCTCTCGAGCTTGCATTTAATATTGCAGAGAGGTTACGCAAGAGAAGGCTTAACTCGATGCAATCTCTACCCTTACTCAGAATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	196307	200071	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	EC:2.5.1.54	Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Quorum sensing	map02024

Gene Ontology

biological_process
GO:0009073 aromatic amino acid family biosynthetic process

molecular_function
GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007934.1	PF01474.11	DAHP_synth_2	54	491	1.80E-198

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.385
SRR1783600	control	92.651
SRR1783602	moderate drought stress	190.627
SRR1811619	moderate drought stress	189.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	138.154
DRR006520	Root Summer glycyrrhizin high producing strain	136.684
DRR006521	Root Winter glycyrrhizin high producing strain	297.587
DRR006522	Root Winter glycyrrhizin high producing strain	290.396
DRR006523	Root Summer glycyrrhizin low producing strain	213.144
DRR006524	Root Summer glycyrrhizin low producing strain	213.935
DRR006525	Leaf Summer glycyrrhizin high producing strain	128.573
DRR006526	Leaf Summer glycyrrhizin high producing strain	124.244

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	89.244
SRR2868004	Drought Stress (root)	104.017
SRR2967015	Control (root)	176.257

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.817
SRR9715740	Leaf	102.923
SRR9715741	Leaf	89.475
SRR9715739	Root	86.308
SRR9715742	Root	78.215
SRR9715743	Root	74.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	96.702
SRR8749028	MeJA induced 9h	133.359
SRR8749029	MeJA induced 9h	84.996
SRR8749030	Uninduced	56.408
SRR8749031	Uninduced	34.850
SRR8749032	Uninduced	67.839

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.944
SRR8400027	Control - Root	73.146