Gene detail

Gene detail information of Glyur000136s00007930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64250.2	1.00E-145	Aldolase-type TIM barrel family protein
NR	XP_003600771.1	0	2-nitropropane dioxygenase-like protein [Medicago truncatula]
COG	YP_002498218.1	2.00E-87	2-nitropropane dioxygenase [Methylobacterium nodulans ORS 2060]
trEMBL	tr\|G7J9Z8\|G7J9Z8_MEDTR	0	2-nitropropane dioxygenase-like protein {ECO:0000313\|EMBL:AES71022.1}

Sequence

Transcript Sequence

>Glyur000136s00007930.1
AAAGGGCACGTGTTCGAGTTCATGTTGATGTACCCCACACACACATGCACCTCAGTGCCATCCTCCACCTTTGTACTGTGTTTGTTGTGTCAGACATTCTGGTGAAGGAAGAGAACGATCGACAATATGGGATGGAGAGGGATACTGGGTTTTGAATATGGCATNGTTCAGGCACCATTAGGCCCTGATATCTCTGGTCCCCACCTCGTTGCTTCTGTTGCCAATGCTGGTGCTCTTGGTCTCCTCAGGTCCCCTGATTGGGAATCGCCGGATTACTTGAGGGAGCTCATAAGGACGACTAGGACCTTAACTGATAAACCCTTTGGGGTTGGTGTCGTTCTAGCCTTTCCTTGTGAGGAAAACTTGAAAGTCATTCTGGATGAAAAAGTGGCAGTCTTGCAAACTTATTGGGGTGATTGTTCAAGGGAATTGGTAACTAAGGCTCATTCCGCTGGGGTCAAAGTTGTTCCACAAGTTGGGAATTTCAACAGTGCAAAACTGGCAATCGAAGCAGGTGTCGATGGAATAATTGTCCAAGGACGTGAAGCTGGTGGTCATGTCATTGGTCAGGATGGTTTAATTTCTTTGGTGCCAAGGGTGGTTGATCTTGTTGGAGACCATGATATACCCGTCATTGCAGCTGGAGGAATTGTGGATGCTCGAGGTTATGTTGCTGCTCTAGCACTTGGTGCTCAAGGCGTCTGCCTAGGCACAAGGTTTCTCGCAACTCAGGAAAGCCATGCTCATCCTACATACAAGAGAAAGTTAGTTGAACTNGATGAAACTGAGTACACAGATGTATTTGGCAGGGCAAGATGGCCTGGTGCACCACATCGCGTCCTGCAGACACCCTTCTTCAAGGACTGGAGATCCCTTCCGCCTCATGAAAATGAAGCCAACCAGCCTGTCATTGGCCATTCAACAATTCACGGCGTGGAGAAAGAGATACGACGTTTTGCTGGAACAGTCCCAAACATGACAACTACAGGAGATCTTGAGAGCATGGNGATGTATGCTGGCCAAGGTGTTGGTCTCATCAAGGAAATTCCGTCCGCTGGTGAAGTGATAAAGAGGCTAGTTGACGGGGCTCAGCTTATAATTCAGCAAAACTTTGAGTAGATTGTCAAATTCCAAGTGAGAGTAGTCTTAACATGTAGTAGCCTGGTCAAATTGATTCTCAGTGTGTCCCGGCTTGCGAGTATGATTGTGGCCTAGAATTACAAGAGTACTAGTTTCAAATCAAAATTCACGTCGTCCAGTGAATGTTATGCATATTTAGAAGTGAGGATGAATGTTACCTTGTTACTGTTATTGTAACCCATGAATAAGTTAAATATATTCTTAGTCTTATAAATAAGAAAATGTTCGCTTTTGGTCTCCCAATATCTCATTTTAGTCCCTCATTTTTTGAAATAGTCTACATGTAGTCTCTATCTGATGAAATATGATTAAATAAAATGGAACATAATATAGTGCATTTCATTCTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	171725	175185	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0018580 nitronate monooxygenase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007930.1	PF03060.10	NMO	6	319	7.20E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.419
SRR1783600	control	12.458
SRR1783602	moderate drought stress	18.285
SRR1811619	moderate drought stress	18.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.260
DRR006520	Root Summer glycyrrhizin high producing strain	14.904
DRR006521	Root Winter glycyrrhizin high producing strain	200.677
DRR006522	Root Winter glycyrrhizin high producing strain	194.632
DRR006523	Root Summer glycyrrhizin low producing strain	19.494
DRR006524	Root Summer glycyrrhizin low producing strain	19.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.715
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.179
SRR2868004	Drought Stress (root)	42.898
SRR2967015	Control (root)	18.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.170
SRR9715740	Leaf	16.005
SRR9715741	Leaf	38.207
SRR9715739	Root	46.867
SRR9715742	Root	65.907
SRR9715743	Root	58.526

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.344
SRR8749028	MeJA induced 9h	55.375
SRR8749029	MeJA induced 9h	54.244
SRR8749030	Uninduced	303.092
SRR8749031	Uninduced	259.714
SRR8749032	Uninduced	256.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.707
SRR8400027	Control - Root	35.668