Gene detail

Gene detail information of Glyur000136s00007927

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02170.1	1.00E-75	metacaspase 1
NR	XP_004485589.1	0	PREDICTED: metacaspase-1-like [Cicer arietinum]
COG	YP_003847815.1	4.00E-20	peptidase C14 caspase catalytic subunit p20 [Gallionella capsiferriformans ES-2]
Swissprot	tr\|Q7XJE6\|MCA1_ARATH	4.00E-91	Metacaspase-1
trEMBL	tr\|G7IPJ0\|G7IPJ0_MEDTR	0	ICE-like protease (Caspase) p20 domain protein {ECO:0000313\|EMBL:AES63463.1}

Sequence

Transcript Sequence

>Glyur000136s00007927.1
CNATAATTATGTTATAATAATTAAAAAAGAAGGTACACTGGTGTTTAAAATCCAAAGGAATGTTTGACCAAAAAAAAAATCCAAAGGAATGGAACACTTGCAGGGTTGCAGCATCTGGTTCTTGATACCTAATTTGATGAGTGATAATCCAAAGAGAAATATCTAAATCTTATCTTGGACACAACTGAATGATTCTCCAATCATTCCCAGCCTCATGTTTCCCATGCCGAACTAAAGCATAATTTAGGTTCATCTCAGCTCAGATTCAGAGTCACTCGTTGATATATTAGGCAAGCATTTTAGTTTCTGTGCATGCTTTGCAATTGGCATGAAAAGCACCAGGTCGAATATCATGTATCAGCCCAACCAGGATAATGCTATTGCCAACAACACAAAGCAAGAGCTTAGAGTGGAATTGCAGTCTACTAGATCCTCCATAATCACTGCCAATCCTGTATCTGAGGATGAACAGAATGACAAAACTTTGATAAACAATCTACCTGGGAGCATTTCAGGAAATGGGAATGGATCAGTTTTTATTGGCATCTACAATTACAACTACAACGTGACTTATCCTGGCCATGGGATACCTGTCCAACTCTATTATCCTCAGCCTCAGCTGCTACCTTCATTGAGGCCTCCTTCTGCATATGGTAACAAGAGGGCTGTGTTATTTGGAATCAGTTATGGTGACACCGGGGCGCCGAGGCTTAAAGGTTCTGTGAATAATGCTCGGTGCATGAAATGCTTTCTGATTGACAAGTTGGGTTTCCCTAGTGATTCCATTTGCATGCTCACAGATGATTCAGAGGACAGTAATACAATCCCAACAAAATGTAACATGCGAATGGCCATGAGGTGGTTGGTTGAGGGTTGCCAACCAGGGGACTCATTNGTGTTTTACTTCTGTGGACATGGATCAAGGGTAAGAGACCTTAACAAGGACGAGCTTGATGGGTATGATGAAGCAATATGCCCTGTTGATTATGAGCACGAGGGGAAGATTCTGGACGATGAAATCAATGCTACAATTGTTAGGCCTCTACCTCATGGTGTCAAACTTCATGCCCTTGTTGATGCATCCTTTAGTGGGACAATTCTTGACTTACCATTTATGTGCAGGATGAACAGGATTGGTTCTTTTGGATGGAAAGATCATAGACGTCACAGAGCTGGCTACAAAGGCACAAGAGGAGGGCTAGCAGTTTGCGTTTCAGCCTGTGATGATGCTGCAAATGCAGCTGACAGATCGGCCTTGACTTACAGTTTCATCCGAGCCATGCGAGATGTACCTAAATTGACTTATGGCCGCTTGCTCAACGCCATGCGCTCTACAATCCAGTGGTCTAAAGCAGGAAAGTGTGAACTAAAAGGCCAAGAGCTTGTCAGGGACACTAGGCAGCAGTATGCTCAGGAGCCACAACTGTCGTCTTCTGAGAAGTTTGATATCTGTTCAAAGTCAATTCTAATGTGACACTGACACTGACACATAACAAGTGGTAGTACTGAAAAAGAAAATGGGTATGAGGAATAGGTGAGGTTAGTCCTGTTACTAATGTCCAGTTGATACATACATAAATAAAGGGTTATTGGATAGGTTTGGCTTTAAACAAAGGAATTACTAGTTACTGCACTGTACTTTCTCATTTTGCTGTCCAACCACTAGCTGTTCCTAAACATTGGTACAAATTAAGTCATTCCCAACAACCAACAATAAACTTTTATAGATGCTTGTCCCTCTCTGATTTATATATTTATGATTTATATTGAGGATGTGAGTGAGTTATCAAAGTTACATTGTTGAATTTATGGATGCAATGCTAAATTGTAGTAACTTGTAAAACAGTATCAATGAGGATGAGAGAGTATAATATCAAAGAATGTGGTACATGGGAAGTTGACAACTAGGCTGATTTGGTAAGGTTTGTTCTTTTTGTTATGANTCATGAACAAAGTGTTCTAAAAGCTTAAGCTGTTGACAAGTGAAAGCACATAAATGGTTTTATGAGCTTGCTTGGATGCCAAAGCTCTAGCTTTTGACTTATAGAGAAGTTAGTTTTATTTTACATCTTATTTTTCTCATATATGNACAAGAGAAAAAATTGTTAAATAGTCACTTATAAATAGATAGGTGCTTTTAGAGAAGTTAAAAAAGATAGCTTTTGAAAAATGTGAAGAGCAAAAGTTAATTTCAACTTATGTGAGAAGTTGTTAGTTAAAAAATACAGGCTAGAAGTGCTTATGGAGAAGTTTATCCAAANTGGGTCTATATCTNATATGTTCTCTCACATGAGTGTCTTTTGGACTTGAAAGGTAGACAAAGCCCAAACCCATTTTACCTTATCCTGAAATTTAACTTTTATTAGAAGAATGAGGGCAATAAGGATTGAACTCTAGACTACAAGGTTAACTTGATACCACATGTCATGAACCAACTATCCCAAAAGCTTAAGCACCTAGATAAAAGCACATGAATGGTTTTATATCTAATACTTTTTATTGGNGTTAACACACAGTTAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	157383	160731	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004197 cysteine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007927.1	PF00656.17	Peptidase_C14	111	372	2.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.221
SRR1783600	control	0.217
SRR1783602	moderate drought stress	0.553
SRR1811619	moderate drought stress	0.571

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.773
DRR006520	Root Summer glycyrrhizin high producing strain	0.766
DRR006521	Root Winter glycyrrhizin high producing strain	1.146
DRR006522	Root Winter glycyrrhizin high producing strain	1.178
DRR006523	Root Summer glycyrrhizin low producing strain	0.306
DRR006524	Root Summer glycyrrhizin low producing strain	0.306
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.648

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.754
SRR2868004	Drought Stress (root)	1.336
SRR2967015	Control (root)	1.845

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.701
SRR9715740	Leaf	2.860
SRR9715741	Leaf	3.173
SRR9715739	Root	0.101
SRR9715742	Root	0.416
SRR9715743	Root	0.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.799
SRR8749028	MeJA induced 9h	1.318
SRR8749029	MeJA induced 9h	0.742
SRR8749030	Uninduced	1.285
SRR8749031	Uninduced	1.628
SRR8749032	Uninduced	1.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.266
SRR8400027	Control - Root	0.278