Gene detail

Gene detail information of Glyur000136s00007921

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37990.1	8.00E-86	ribosome biogenesis regulatory protein (RRS1) family protein
NR	XP_007139018.1	0	hypothetical protein PHAVU_009G258100g [Phaseolus vulgaris]
Swissprot	tr\|Q9SH88\|RRS1_ARATH	1.00E-135	Ribosome biogenesis regulatory protein homolog
trEMBL	tr\|V7AZD0\|V7AZD0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11012.1}

Sequence

Transcript Sequence

>Glyur000136s00007921.1
ATTTTACTGTCGTTGCGTTGAGCTAGGTTACTAATACTAACGGTGCTGTCTGCNGTGGTGTTGTCTCGTTGAGTTGAGGCACGAAGTAGAAACCGTACCTTTCTCAGTCGCCGTCTGCTCTCTGCTCTGACCTTCTCAGTCTCACCTTCGCCGTCACCGCCGTCTCCGCGCCGTCTGCTCTCTGGTGGTGGTGGTATCAACTATCAAGGGGAGTGTAATACGGTGAATGTAAGTGATGTCTCCATTGCCCAATCAATCACACCAAATAAGAGTTTGATACGCCAACAATATACGGTGCTCTGTCTGCAGTCTTCATTTGCTTCCTATAACCCAGTTGAAGCAGATGGAGATCGAGGGCGAGAAGCAGAAGCTGTTTGAGGTGGACCTCGGTAACCTGTTGGCCTTCGACTCTCATCACACCTTCCCTTCTCAACCACCTCTTTCCAGGGAGGAGCTCGTCAACCATTGTTTACACAAAGGCACTGNGTTAGTTCAAGCTATCGCAGATGCCCTCTTTACTTTGCCCTCAACTGAAGATGTAGATGGACCCCTCGTCAAGTTGCCTCCACCACTCACTAAATTGCCCAGAGAAAAACATCTGCCAAAGCCAAAGCCTCCTACTAAGTGGGAGATTTTTGCCCAAAAGAAAGGCATAAAAAATCGGAAGAAAGACAAGATTGTATATGATGAGCAATCTGGAACCTGGANACGCAGATATGGGTATGATCATGCAAATGATGAAGATGCTGTACCGATCATCGAGGCAAAAGCTACTGATGATCCAGAAGAGGATCCTTTTGCCAAAAGAAGAGAAAATAAGAAGAAAGGAATTGAAAAACAGGAGAAAAATCGACTACAGAACTTGAAAAATGCTGCAAAATTTGGGGCTTTACCAAGCCATGTTCAGTTGGCTGCTACTGCTTTGCCTATAACAGGAACTCAGGCAGCACCAAAGAAAGTTACCAAGGATGAATTGGGCAATGTGGCAGGAATTGCAGCAACTGCCACAGCCAGTGGTGGGAAATTTGACAAGAAATTGCCAGGTGAAAAGCCTGCACAACATAAAGGAAAATATCGAAAGTTCCTGCCGGTGGTGGAAGGAACAGGGATAGGATCACTGGAGAGGGAACAAACTGAAAAAATATTGAACAAGATCATCTCCAAGAATTCCCATGATATACTCAATGTTGACAAGGCTGTCACAATGCACAATGTGAAGAAAGAGAAAAGACAGAAGAGTAGCAAGAAAGGGAAAGTTTCAGCAACTGACAGCAAATTGAAAACTCAGAAGAAGTCTTTTAAAAAGGGAAGTGTCAAGAAAGGCAAGGCAAAAGGAAAATAGTTTAGATTTTATTAGAGTTTTTGGATTTAAAGTTTTGTAGACGAATATCTCATCCATTTTATTTATTCTCTCTGTATAATTAAAAATTCGATCTTCTACATTCTAATTGACGAAAAGGCTCCTTTTAGTTTTTCAAATCAATGCTTAAAATATATTGCACGCAGCAGGCATATTAATTCCAATTCCATGCTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	138202	142417	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042254 ribosome biogenesis

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007921.1	PF04939.7	RRS1	12	175	1.60E-53
Glyur000136s00007921.2	PF04939.7	RRS1	22	185	1.80E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.267
SRR1783600	control	8.119
SRR1783602	moderate drought stress	13.279
SRR1811619	moderate drought stress	13.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.363
DRR006520	Root Summer glycyrrhizin high producing strain	20.671
DRR006521	Root Winter glycyrrhizin high producing strain	27.395
DRR006522	Root Winter glycyrrhizin high producing strain	26.369
DRR006523	Root Summer glycyrrhizin low producing strain	21.564
DRR006524	Root Summer glycyrrhizin low producing strain	20.023
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.798
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.558

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.303
SRR2868004	Drought Stress (root)	21.027
SRR2967015	Control (root)	21.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.717
SRR9715740	Leaf	12.444
SRR9715741	Leaf	9.086
SRR9715739	Root	1.243
SRR9715742	Root	8.869
SRR9715743	Root	8.128

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.793
SRR8749028	MeJA induced 9h	28.597
SRR8749029	MeJA induced 9h	44.168
SRR8749030	Uninduced	15.351
SRR8749031	Uninduced	10.910
SRR8749032	Uninduced	10.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.099
SRR8400027	Control - Root	16.650