Gene detail information of Glyur000136s00007920 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06360.1 | 4.00E-141 | Ribosomal protein S8e family protein |
| NR | XP_007135124.1 | 0 | hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris] |
| COG | YP_004781526.1 | 7.00E-06 | 30S ribosomal protein S8e [Pyrolobus fumarii 1A] |
| trEMBL | tr|V7AR68|V7AR68_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07118.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 132548 | 135872 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000136s00007920.1 | PF01201.17 | Ribosomal_S8e | 1 | 259 | 1.70E-40 |
| Glyur000136s00007920.2 | PF01201.17 | Ribosomal_S8e | 1 | 259 | 1.70E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.216 |
| SRR1783600 | control | 29.073 |
| SRR1783602 | moderate drought stress | 16.275 |
| SRR1811619 | moderate drought stress | 16.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.340 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.314 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.644 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.751 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 80.974 |
| SRR2868004 | Drought Stress (root) | 59.572 |
| SRR2967015 | Control (root) | 54.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.534 |
| SRR9715740 | Leaf | 28.164 |
| SRR9715741 | Leaf | 18.135 |
| SRR9715739 | Root | 10.305 |
| SRR9715742 | Root | 23.752 |
| SRR9715743 | Root | 24.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 98.204 |
| SRR8749028 | MeJA induced 9h | 67.519 |
| SRR8749029 | MeJA induced 9h | 68.127 |
| SRR8749030 | Uninduced | 20.121 |
| SRR8749031 | Uninduced | 12.035 |
| SRR8749032 | Uninduced | 13.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.933 |
| SRR8400027 | Control - Root | 35.615 |