Gene detail

Gene detail information of Glyur000136s00007918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64220.2	0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
NR	XP_004485582.1	0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Cicer arietinum]
COG	YP_004049702.1	3.00E-07	hypothetical protein Ocepr_2334 [Oceanithermus profundus DSM 14977]
Swissprot	tr\|Q9FY74\|CMTA1_ARATH	0	Calmodulin-binding transcription activator 1
trEMBL	tr\|G7INW0\|G7INW0_MEDTR	0	Calmodulin-binding transcription activator 1 {ECO:0000313\|EMBL:AES63449.2}

Sequence

Transcript Sequence

>Glyur000136s00007918.1
TGGAGACCGTCGTCCGGGAATCCGGTTATCCATCTACCTACGCATCCCTCACGCGTCGCAAAACTATTGGTCTGTAANCCATTTTCCCATTAACGATTCAATGTTCAATTTCCCCAGAAAAAACTTTACGACTATNTTTATAAAAAAAATTCAGATATACTGCGTCAGTTTTTCACTTTGTCACGTCACTTGAGTGTTGAGGGAAAAAGGAAAACAAAACAAAACAAAACAAAGGAACAGAGAGTCTCTCTCTATCTCTCTCTCGCTGTTCGTCGTTCGCGTTGATCTCAGATTCAGTCTTCGTCGCCATGGCGGACCGTCCTTCTCTCGGATTGGGTCCTCGATTAGATATTCAACAATTACAATTTGAAGCTCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTACCGGATGTTTCATATTGCATCAGAACCTCATATTAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAANGATGGGCATAATTGGAGAAAGAAAAAAGATGGGAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAATACTGATAGTGAGGAGGTCATATCAGATTCCCAGAAGACCAGCTCTCCATTGTCTGNCTTGTCCACAAATTATAGCAGTGTGCCATCACTGAGTTCAGATTCCATGAGCCCAACTAGCAGCTTGGCATCTTTACGTGAAGATGCTGATTCTGGTGATCATGGACATTCATCAGTTTCTGGAACAGATTATATCCCACATTTTGACAGGGATAAATTTAGAGGAAATGATACTACTTATCTTGATGGCCTGAAAACACATGGCATGGCACCATGGGACACTGTCTTGCAAGGCACTGCTGAGTTGCATGGTGATCCTTCTCTTGTATCTTTTCCTTCCATCCCATCTGGTTCAATGGGAAACATTATTGAACAAAAACATAACATCTTGGGTGACCTTTCAATGAGCAAAAGCAATGCTGGACACATGCCGACCTTGACCCAATCATTGAGTTTGGAATTTGGATCTGATTATGGCACTGGTTTACTAGNGAATGGAGCTCATAGTGAAAGTTCTGAAATTTCTCCTGCCATGTTTAGTTTTCATGGTGAGCCAAAAGAGCAGCTTGTGCAGCAAAACTATCCAGAACAGCATGTAGATGGACACCCTCAACATGCGCTAAAGTCCAATTCTGCAAATGAAGTTCCTGGTGAAGAAACTATCAACTATCCCTTAACTATGAGGCGCACATTATTGGATAGTGACGAGAGCCTGAAGAAGGTTGATAGTTTCTCTCGGTGGATTACTAAAGAACTTGGAGAGGTGGATGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACTGATGAATGTGGGCATGTGATAGATGATACCTCATTGAGCCCATCTTTATCTCAGGACCAACTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAACCGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGAGGACAACCTGGAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCGCCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGTGAAGTGCGGGAATTTGATTACAGAGAGGGCTATTCTAGAAATGTAGATTTTGCAGATCTTTTCAACAGTTCGNCTGATATGCTGCTTCATTTGCGACTCGAGGAGTTTCTTTCATTAAAGCCAATGTGCCCTTCAAATCAAACCTTTGAGGGCAATACAGAGAAAAGAAACTTAATTTTTAAGCTTATTTCACTGAGAGAGGAAGAAGAATATTCAAGCAAGGAAGAGCCTACTGTAGAGATGGATATATCACAACACAAGGTGAAGGAGCATCTGCTTCACAGGCAGGTTAAAGAGAAACTGTACTCATGGCTTCTTCACAAAGTAACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGTGTGCTACATTTAGCAGCTNTTCTTGGTTATGATTGGGCCATAACCCCAATTTTAATTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACATTGGGCAGCATCCTGTGGCAGCATAACACAATTTGGCTCCTTATGTCGTCCTTTGCTTAGGGAGCGGACAGTNGCTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCATTGACAGATCCATCTCCAGCATTTCCTTCAGGTAGAGCAGCTGCAGATCTTGCTTCTAGCAAGGGGCACAAAGGAATATCTGGTTTTATTGCAGAGTCTTCATTAACTAGCCAACTTGAATCCCTCACAATGGATGATCAAAATAAAGGTGGTCGGCAAGAAATTTCAGGAATGAAAGCTGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCTCTATAGTGATATGCCTGATGCCCTCTGCCTTGAGGATTCTCTTACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGAGTGAAGATGATGAATTTGGTTTGTCAGATCAGCTAGCTCTTTCCCTTCTAGCTTCTAAGACATGCAAATCTGGACAAGATGGTTTAGCCAATTCTGCTGCGATTCAAATACAGAAAAAGTATCGTGGTTGGAAGAAGAGAAGAGAGTTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACAATCATATGGTCTGTGGGAATCCTGGAGAAGGTTATATTACGCTGGAGACGCAAAGGTAGTGGTTTGCGTGGATTTCGACAAGATGCCATTAATAAAGCCCCCGTCCAACAAAATGATTCTCCGAAAGAGGATGATTATGATTATCTGAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGGGTGAAGTCAATGGTTCGGTATCCAGAGGCACGGGCTCAATACCGGCGCTTGCTAAATGTTGTTGAAGACTTCCGTCAAAAGAAGGCATGTGATATGGGTTTGATCAACTCAGAGGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGATTCTCTACAGTGACTATTCCTATCGTCNCCACTGTTAATATATATGGCCAGTTGGTTTTATTTGGCATTGGGAAAGTCCTAACATCATCTTGATGTATATATTTCTAATTAAAATTACTTGGATCGAAGGCAGAATATATATAGGTTATGATAACTAGCATGCATTCTGGTTTGACAGTTTAGATATTTAATCTAATGAGACCTGGTTTGATTTTATTTGTGGTGATTTTTCATATGACAGGATGATTGTTTATAATTGGTCGGGGGTTATAACATAATGTTGTACCCTAGCTTGCCAATGTATGACTACAAATTGTACAAAAATCTACTTGGCGAGAGGAATTATAACCCAAGTGCTAATTATGAGATCGAGCTTGTTTTATTGCTTACATTTTCTTTTTGATGATTTGGTTATTCTGCAACTCTTTTTGGTCATTAGCCCCAGCCTCTCCCATCTCTCTTGNAGTTTTCCATTTTAGAATCTGTACTTTTGCGTTGTAGAGGATGCAGTCATANCCATTGTTTTCGATTTTCTTCTTCAC

Protein Sequence

>Glyur000136s00007918.1
MADRPSLGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFHIASEPHIRPPSGSLFLFDRKVLRYFRXDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKSNIGGNTDSEEVISDSQKTSSPLSXLSTNYSSVPSLSSDSMSPTSSLASLREDADSGDHGHSSVSGTDYIPHFDRDKFRGNDTTYLDGLKTHGMAPWDTVLQGTAELHGDPSLVSFPSIPSGSMGNIIEQKHNILGDLSMSKSNAGHMPTLTQSLSLEFGSDYGTGLLXNGAHSESSEISPAMFSFHGEPKEQLVQQNYPEQHVDGHPQHALKSNSANEVPGEETINYPLTMRRTLLDSDESLKKVDSFSRWITKELGEVDDLNMQSSPGISWSTDECGHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESETEVLIIGSFLKSQPERTTWNWSCMFGEVEVPAEVLANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDYREGYSRNVDFADLFNSSXDMLLHLRLEEFLSLKPMCPSNQTFEGNTEKRNLIFKLISLREEEEYSSKEEPTVEMDISQHKVKEHLLHRQVKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAXLGYDWAITPILIAGVNINFRDVNGWTALHWAASCGSITQFGSLCRPLLRERTVAVLVSMGADCGALTDPSPAFPSGRAAADLASSKGHKGISGFIAESSLTSQLESLTMDDQNKGGRQEISGMKAVQTVSERTATPVLYSDMPDALCLEDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQSEDDEFGLSDQLALSLLASKTCKSGQDGLANSAAIQIQKKYRGWKKRREFLIIRQRIVKIQAHVRGHQVRKQYKTIIWSVGILEKVILRWRRKGSGLRGFRQDAINKAPVQQNDSPKEDDYDYLKEGRKQKEEKIQKALSRVKSMVRYPEARAQYRRLLNVVEDFRQKKACDMGLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	115108	125160	+

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007918.1	PF03859.11	CG-1	22	136	1.60E-52
Glyur000136s00007918.1	PF01833.19	TIG	438	522	2.20E-05
Glyur000136s00007918.1	PF12796.2	Ank_2	627	685	2.60E-06
Glyur000136s00007918.1	PF00612.22	IQ	861	879	0.0016
Glyur000136s00007918.1	PF00612.22	IQ	884	903	0.00018
Glyur000136s00007918.2	PF03859.11	CG-1	22	136	1.60E-52
Glyur000136s00007918.2	PF01833.19	TIG	438	522	2.20E-05
Glyur000136s00007918.2	PF12796.2	Ank_2	627	698	8.10E-10
Glyur000136s00007918.2	PF00612.22	IQ	848	866	0.0016
Glyur000136s00007918.2	PF00612.22	IQ	871	890	0.00018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.421
SRR1783600	control	15.578
SRR1783602	moderate drought stress	20.937
SRR1811619	moderate drought stress	20.733

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.480
DRR006520	Root Summer glycyrrhizin high producing strain	16.329
DRR006521	Root Winter glycyrrhizin high producing strain	22.428
DRR006522	Root Winter glycyrrhizin high producing strain	22.034
DRR006523	Root Summer glycyrrhizin low producing strain	17.673
DRR006524	Root Summer glycyrrhizin low producing strain	17.612
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.019
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.092

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.356
SRR2868004	Drought Stress (root)	50.330
SRR2967015	Control (root)	52.284

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.121
SRR9715740	Leaf	19.430
SRR9715741	Leaf	26.484
SRR9715739	Root	5.851
SRR9715742	Root	21.900
SRR9715743	Root	19.668

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.663
SRR8749028	MeJA induced 9h	84.705
SRR8749029	MeJA induced 9h	36.301
SRR8749030	Uninduced	40.882
SRR8749031	Uninduced	53.840
SRR8749032	Uninduced	28.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.818
SRR8400027	Control - Root	27.105