Gene detail information of Glyur000136s00007917 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33520.3 | 2.00E-23 | P-type ATP-ase 1 |
| NR | XP_004485578.1 | 8.05E-45 | PREDICTED: uncharacterized protein LOC101513516 isoform X1 [Cicer arietinum] |
| COG | YP_007150693.1 | 6.00E-08 | heavy metal translocating P-type ATPase [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q9SZC9|HMA6_ARATH | 7.00E-26 | Copper-transporting ATPase PAA1, chloroplastic (Precursor) |
| trEMBL | tr|K7M9R5|K7M9R5_SOYBN | 1.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05891.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00136 | 103080 | 105193 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000136s00007917.1 | PF00403.21 | HMA | 79 | 138 | 9.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.782 |
| SRR1783600 | control | 14.340 |
| SRR1783602 | moderate drought stress | 14.885 |
| SRR1811619 | moderate drought stress | 14.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.588 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.582 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.747 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.204 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.383 |
| SRR2868004 | Drought Stress (root) | 22.264 |
| SRR2967015 | Control (root) | 27.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.191 |
| SRR9715740 | Leaf | 52.805 |
| SRR9715741 | Leaf | 43.883 |
| SRR9715739 | Root | 17.663 |
| SRR9715742 | Root | 13.366 |
| SRR9715743 | Root | 14.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.275 |
| SRR8749028 | MeJA induced 9h | 4.076 |
| SRR8749029 | MeJA induced 9h | 6.076 |
| SRR8749030 | Uninduced | 5.362 |
| SRR8749031 | Uninduced | 3.436 |
| SRR8749032 | Uninduced | 4.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.400 |
| SRR8400027 | Control - Root | 34.967 |