Gene detail

Gene detail information of Glyur000136s00007908

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20140.1	5.00E-164	Leucine-rich repeat transmembrane protein kinase
NR	KEH31437.1	0	LRR receptor-like kinase family protein [Medicago truncatula]
COG	YP_004775215.1	2.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	0	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|A0A072UP49\|A0A072UP49_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH31437.1}

Sequence

Transcript Sequence

>Glyur000136s00007908.1
CTAACGCGCGTATAATATTAATCNTAGCAAAATGGAGGGTGGTTTGAGGAACAAAAGCTTCCTTCTAATTATAATGTTTATGTTTATTGTGCTTGCGGTAAACACAGACATAGTAGTGCATGGGTGGGATGGCCAAAGCGGCACGGTTGTAGGGTTCTATTCGAGGACATGTCCACGTGCTGAATCCATTGTGAAGTCCACAGTTGAGTCCCACGTTAAATCTGACCCTACTTTTGCTGCTGGCTTGCTTCGGATGCATTTCCACGATTGCTTCGTGCGAGGCTGCGACGCTTCCGTCCTCATTGCCGGCAATTCCACCGAGAGAACGTCGCCGCCAAACCTTAGTTTGAAAGGATTCGAGGTTGTTGATGATGCCAAGGCCAAGCTGGAGGCTGCGTGCCCCGGTGTCGTGTCTTGTGCTGATATCCTTGCCCTTGCTGCCCGTGATTCCGTTGTTCTGAGTGGTGGAATGAGTTGGGAAGTGCCAACGGGACGGAGAGATGGACGGGTTTCAATTGGGAGTGAGAGTCTGAATTTGCCGGGTCCTAATGATTCCGTCGCAATCCAGACGAANAAGTTTGCTGATAAGGGCCTTAACGTCCAAGACCTCGTCATTCTTGCTGGTGGACATACAATTGGTACAGCCGCTTGCCGATCCTTGGCAGACAGAATATACAACCCAAATGGGACTGATCCATCAATCGACCCTTCATTTCTTCCATTTTTGCGACGAATTTGTCCACAAAACCAACCAACGAAGCGAGTTGCACTTGATACGGGAAGCCAATTCAGGTTCGACACCTCTTACTTTGCTAACATGAAGAAAGGCCACGGAGTTCTACGTTCGGATCAAGTGCTTTGGAGTGACCCTTCCACAAGGAGCATTGTTCAGAAATACTTGNCCACGGGTCCCTTCAACTTCGATTTTGGCAAGTCTATGATTAAGATGGGCAACATTGGTGTCAAGACTGGTGCTGATGAGAACAACCCAAACTACTGCAATTGGAGAGGGGTGTCATGTGGATCCAACTCATTGCAAGTGGTGGGCCTCAACCTTTCTGACTCGTCACTCACCGGGTCAATTTCACCTTCACTCGCCCGTTTGCAAAACCTGCTCCTCCTTGATCTCTCCTCCAATAACCTCACGGGTCCCATTCCACCAAATCTCTCTACCCTTGTTTCCTTGGAATCTCTGCTTCTCTTTTCTAACAACCTCACGGGTCCTATCNCCACTGAGCTTGGCTCGCTGACGAGTCTCCGAGTTTTGCGACTCGGTGATAATGCACTCACGGGTGCGATTCCCGCGTCTCTTGGGAACTTGTCTAACCTAGTCACTCTTGGGTTGGCTCAATGTCGACTCACTGGGTCAATTCCACCTGAACTCGGGAAACTCAGTCGCATGGAGAATCTGACTCTGCAGGACAACCAGCTGACGGGTCCAATTCCGTCGGAAATTGGGAATTGCNTACGCCTTCTCAACTTCAGTGCCGCCTTTAACAAACTAAATGGCCCAATTCCGAGTGGACTGAGTCAACTTAAGAATCTACAAGTTCTCGACCTTGCCATCAACAACCTATCAGGGGAGATTCCGAGTCAACTCGGGGAAATGAGTCAGCTTGTTTTCCTTGATTTCAATGGGAACCAGCTCGAGGACGCTATTCCACCTTCTCTGGCTCAATTGGGTAATCTTCAATTTTTGGACTTGTCCATGAACAAGCTCAGTGGAGGAATTCCACAAGAGTTGGGCAAAATGGGTAAGCTGGTTAACATGATTCTGTTTGGTAACAACCNGATGAATGGTGTCATACCAAGAACCATATGTTCCAATGCAAAAAGTAGTTTGGAATATTTGGTTCTATCAGGAACTGGACTTCATGGTGAGATCCCAGTTGAGCTAAGTCAGTGCCATTCACTGAAACAACTTGATTTGTCTAACAACTCACTCAATGGGTCCATACCTCTTGAGCTTTATGGACTTATGGGGTTAAATGATCTCTGGCTCCACAACAACACCTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTAGCTTGAAGATACTTTCTTTGGGTCAAAACAATTTGCAGGGTGCTCTGCCCAGAGAGATTGGAAAGCTTGGCAATTTGAGAACATTGTTTCTTTATGAAAATCAACTATCTGGGGTTATACCTTTGGAGATTGGTAACTGTACAAGCTTGCAAATGATTAGTTTCTATCGAAATCACTTCAGTGGGGAAATTCCCACCAGTATTGGAAGGTTGAAAGAGTTGAATTACCTTGACCTTAGCAATAATGAGCTTGTGGGTGAGATTCCTGCCACCTTGGGTAATTGTCATAAACTGAACTTCCTGTATTTGGCTAGCAGTCACCTCTCTGGTGCAATTCCTGCAACATTTGGATTCCTCAAGTCATTGCAGTGGCTCGTTATCTACAACAATTCTCTTGAAGGTAACCTTCCCCACCAACTGATAAATTTAGCAAACTTGACGGGGGTGAAATTAGGTGGCAATAAATTCTCTGGTGAAATTCCAACGATGTTGGGACAACTCCATGAGCTAACATTGTTAGACCTCAGTTTCAATAGTTTCTCAGGTCAAATACCACCTTCTCTTGGGATGCTGCCAAAATTAGAAGCACTCAATATTTCCCACAACCAACTTACTGGGAATATCCCTTCNCAAGTTGGTGAAATTAGAAGCTTGGGAGAGCTTAATGTCTCTTACAACAACCTTCAAGGAAAATTGGACAAGGTGTTCTCCCGCTTTCCAGATGAGGCATTTCAAGGGAACCCACATCTTTGTGGAACCCACACACATCCTTGTGAGCATCCAAAAGCACCCAAAACAATTGCAAATTTGAATAATCATTCCCCTCTCCCTCATCATTTTGTATCCAGGAACATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	53673	60996	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function

GO:0004601 peroxidase activity

GO:0005515 protein binding

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007908.1	PF00141.18	peroxidase	54	290	8.10E-75
Glyur000136s00007908.1	PF00560.28	LRR_1	360	382	0.39
Glyur000136s00007908.1	PF13516.1	LRR_6	502	524	0.68
Glyur000136s00007908.1	PF12799.2	LRR_4	528	564	1.00E-06
Glyur000136s00007908.1	PF00560.28	LRR_1	627	648	0.29
Glyur000136s00007908.1	PF13855.1	LRR_8	747	806	6.50E-07
Glyur000136s00007908.1	PF13855.1	LRR_8	843	902	4.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.313
SRR1783600	control	0.325
SRR1783602	moderate drought stress	0.261
SRR1811619	moderate drought stress	0.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.077
DRR006522	Root Winter glycyrrhizin high producing strain	0.126
DRR006523	Root Summer glycyrrhizin low producing strain	0.042
DRR006524	Root Summer glycyrrhizin low producing strain	0.037
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.795
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.919

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.338
SRR2868004	Drought Stress (root)	0.336
SRR2967015	Control (root)	0.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.498
SRR9715740	Leaf	22.363
SRR9715741	Leaf	9.040
SRR9715739	Root	1.212
SRR9715742	Root	4.806
SRR9715743	Root	3.715

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.613
SRR8749028	MeJA induced 9h	12.914
SRR8749029	MeJA induced 9h	7.723
SRR8749030	Uninduced	5.761
SRR8749031	Uninduced	1.440
SRR8749032	Uninduced	1.622

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.295
SRR8400027	Control - Root	2.041