Gene detail

Gene detail information of Glyur000136s00007906

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15820.1	4.00E-119	light harvesting complex photosystem II subunit 6
NR	AAD27882.2	2.41E-169	chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Swissprot	tr\|P27524\|CB4A_SOLLC	8.00E-152	Chlorophyll a-b binding protein CP24 10A, chloroplastic (Precursor)
trEMBL	tr\|Q9XQB6\|Q9XQB6_VIGRR	9.00E-170	Chlorophyll a/b-binding protein CP24 {ECO:0000313\|EMBL:AAD27882.2}

Sequence

Transcript Sequence

>Glyur000136s00007906.1
TGTGGCCAGACANATCTTGCTTCATTAAATTGGTTTTGTTTGGATCTGCTGGTCTCCCAAATTATCTTTATAAACATCGACAACAGCAAAAGATAGAAAGACCAAAGTGGAGTAGAATAGGTGTCCACGTGGTTGGAAGCCAAAATGGATGAGGATGGAGATCCAGTTCCCATTGGTCCGAAATCTATCCACGATAGCTCTCAAGATTTCTTCTTCAGATTTCATTGTCCTACTTGGCCTTCTACGAGAACCCCTTTAGATTCTCTCCCACTTCACATCCACTCACACATAAAACAGTCTCCAAGTGGTGCAATTGCAAAGTGAACGTCAAAAACAGCCTCCATTTTCTCACAAAATCTCTCCAGAGAGTTCTATTATAGAGTCAAAAAAAGAGAGAGATGGCAGCTGCAACATCTGGTGCTGTGTTAAATGGCCTTGGATCTTCCTTCTTATGTGGAGGAAATAGGAGCCAAACCCTGTTGCTGGCTACTACCGTTGGAGGCAAAGTTGGTGCTTNTGTTAGTCCTAAAAGACTTATTGTGGCTGCTGCTGCTGCACCAAAGAAATCATGGATCCCTGCTGTTAAAGGTGGTGGGAATCTCATTGACCCAGAATGGCTCGATGGATCGCTACCAGGTGACTATGGTTTTGACCCACTAGGCCTAGGCAAGGACCCAGCATTTCTCAAATGGTACAGAGAAGCTGAGCTCATTCATGGAAGGTGGGCAATGGCTGCAGTTGTAGGCATCTTTGTTGGGCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTCTCATTTGGTTCTCTTCTGGGGACTCAGTTGCTTCTCATGGGGTGGGTAGANAGCAAGAGATGGGTGGACTTCTTCAACCCAGATTCACAGTCAGTGGAATGGGCCACTCCATGGTCNAGAACCGCTGAGAACTTCGCCAACGCCACCGGCGATCAAGGCTACCCAGGAGGAAAATTCTTTGACCCTTTGGGCCTTGCTGGCACCATCAAGGATGGGGTTTACATTCCAGATAGGGAAAAGCTAGAAAGATTGAAACTTGCTGAGATTAAGCATGCCAGGATTGCTATGTTGGCTATGCTGACTTTCTACTTTGAGGCTGGACAAGGGAAGACCCCCCTTGGCGCTCTTGGCTTGTAAACAAAAACAATTCATGTAGATAATTGAACTTTGAGAAGCTAGACAGTTTGCAAATGAACCTTTGTCCTGTGTTTTGTAACCCCATGACAAATTCAAATTCTATGTTCTGATATTGGATGCACTCACCTTGTGTCTGTGATTTGANGTAGTCATCGTATAAATACTTGCATTTACCTTTTCTTTCTTAAAATCCGGTGCACTGAAAGATATGGGACACTTGAAAAATTTGTGTTTGAACATGTCTGTGTAGCCAATACGGATTTAAAGTTTAACCTTTGCCATACGCAATAGGATAAAGATGCTTGGAATGCATAAATTAATACTCNCAAAACAAATCTGAATAAGAGAACAAAAGGTCAAATGCCGATTTGTTCATCCATCAAAGATAGTCTGAACAACCAAAGAAAACCGTGAAGAACAAAATATTNAGATAGATTTCATTGAAAATGCATATATTAAACGTTCACAAAGTTCTGCATTCAAAAGCAGAAGCGTTTAATTAAAAGATGCAGCAAAATCAACTGAATTCCAGTGGGAAGGAATATGCTATACTTATCCGCTCCCTGTAGCCATCAAAAACTCACCCTCNCACACAACTTCACCTCCAACATATGCCTTACCTTCCATCTTGGCTATTCCAAATCGCTTTTGCAGCTTAGTAAGTGTCATTCTCATAANTAAGGTGTCTCCTGCAATCACGGGCTTACGAAACCGCACTTTGTCTATTCCNGCAAAGAAGAAGNTCTCACGAGAGCCTCCCACTTCAGGTTGCAACATAACTAAACCACCAACTTGTGCCATTGCCTGCAGCAAAAGATTTTACATTCATATCCTTTTTGAAAGGAGGTTATAACANATTATATTTCTTTCCCTTTTTTAATTAGTGCCATGGCCCAACATTTTTNATGTACAATTAACATACATATAAAGCAACTATGTAAGGAAGTGATGAAAANCTAGAAGTCAATATTATTTCAACTACAAAACCCAATCAGAACTCTTGGTCCATAAGAAACTACAAGATTAATTGATTTTCTGATGGCCATAGGCGGGTGACTCAAAGAACTATTACAAGNGGGAGAAGTTCAAACTAGAATTACAAGATCTTTCAAAAATTCCTATCCCATGTGACTAAAAAGATGTTTCCTCTGATTCAAGATTTATTTTATCCTACNATGCAACACATGCACAATAGACTATTTCATTCTCTTAGTGGATTTCCAATTTATGTCAACTTATATAATGAAAGGAATAAATAAATATGGGCAAAGTTTTACATGCATGAGTACACTAGCAAGGGAAATAGACCCTTACAAAAGAAAAATACAACATGGGCTACACAAAACATGGCTGGAAAGGAAATTTAGGAANGTTGAAGATGTCAGAAAGATGAGCATTGCCAGAAAGACAACTCAGCAAGATGATCGGAATGATAAGCAACCTGNAGAACTAGTTGGAATGTTNCATAACCAAGGAAGAAGAGACTCGGTGGAATGATATCAGCGGAAATTTCTTGGCAAGCAATTATCCACAGTAAGAACTAAAACTTCTCAGATCCACCAAGAATAACATTTAGAAGCCATTGGTATGATTTACAATGAGAGGCTAGAATGAATGAGTATGACAGCTGATTCATCAATAATATGGAATAGTCAGAGCCAAAATGAAAATGGGATGGTCAGGGCAAAACTGCATTGGGATGGTTGGGGTCAGCCTTTATTCGAGATAGCCGGAGGCTGCTAGAAGGACATGCCAATTAGACANGGTAATCGAAGGCTTCTGAGACAGGTTGTGGAAGTGATAGACAGAAAAATCTACTAACAAAGAGAGAACTTGTGAATGAAAGAGTGTCTGGGATTTGTGCACGATTATGAGAAGGGAAAAAATCATGGAAATAATGACATTATTATAGTAATGTTCCAGACTTCAAGAAACTCGGCAGCAGAATAGTAANGAGATGGGTCAAGGAGCATGATAATGCAAGCATATCATGAACTAAGAGGTTTTCTACTTTTTTAAGTACTAAGCTAATCCACTCTCTGTTGCCTGGTATGACTAGGCCTAAAATCTTTTAAAATTTACATGAATGAAGTTCCACTCCAGCTATAAATATAGAACACGTTTCACCAACACAGAGTCTAGCCTTCTAGGATAGCTGCCAGCATGATACTTGATAGTTCAAAGGAATTGATAATGTCATTTTGCATATGCAAGATTTCTTAAAGGTAGAGGCAGCGCAGTGTTTACCTCAACCATGAGAACACCAGGCATGATGGGCCTTTCTGGAAAGTGTCCAGGGAAGAAGTTGTCGTTTATTGTCACATNCTTTATGGCGACTGCAGAAACTCCAGGGTTGTACTCAATCACTCTATCTACCAGCAGAAAAGGAAACCTGAAAAAGAGAGAAAACGGTGAAGGGACAAATCTACGATTCAGAGAACATGTTCCACTTGCNAAAATGTCGAGTTACCTACCTGTGGGGCAAAATCTCACGAATCTGATTGATGTCCATGACGGTTGGGAATGCGGGATACCCTGCAGCAGCACCCATCCAGAAAACACGGTGCGCTTGTCAAAAAAGAAGAAGAAGAATTCGGAAGAGGAAATCAAGAGGGCAAGGAAGAAAAATGCATACTCAATTCAATGGGGGTATCTTGTTGTTGAGGAGCATTAGCGGCATCNGAGGAACAAAACGTGGTTAGTGGCTTCGTTTTCCTCAAACGGGTAGTAGGCATGGGATTATGGGATCTGGAGTTGGGGAATTTGACCAGTGGAAATTTGGGTTGACGGGAAGTGGGTTTGGAAGATGGAGAGGAAATGGGAGAAAGCAGTGTGTTGGAGAAAGCAGAGGGTGCCAATGCCATTGCTGAAAACTTGATGCTATGGAACTTGTAATCCTATTATCCTAACACTAACAGTGGCGAGTTGCACTTGAGTATTTGAGTTGAGTGTATATGGCGAGTCTCTGAGCTAAATTAATGTAAAGGGAAAGGCAGAAGAAGGCGACAGAAACGAGGGTACTAACAGCTACCTTTGATTTGAGTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	40229	44546	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009765 photosynthesis, light harvesting

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007906.1	PF00504.16	Chloroa_b-bind	71	247	5.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.263
SRR1783600	control	7.727
SRR1783602	moderate drought stress	3.595
SRR1811619	moderate drought stress	3.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.756
DRR006520	Root Summer glycyrrhizin high producing strain	5.468
DRR006521	Root Winter glycyrrhizin high producing strain	11.217
DRR006522	Root Winter glycyrrhizin high producing strain	10.982
DRR006523	Root Summer glycyrrhizin low producing strain	2.139
DRR006524	Root Summer glycyrrhizin low producing strain	1.978
DRR006525	Leaf Summer glycyrrhizin high producing strain	120.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	105.754

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.890
SRR2868004	Drought Stress (root)	5.055
SRR2967015	Control (root)	2.826

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	117.096
SRR9715740	Leaf	90.597
SRR9715741	Leaf	81.601
SRR9715739	Root	1.813
SRR9715742	Root	2.159
SRR9715743	Root	2.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.961
SRR8749028	MeJA induced 9h	3.003
SRR8749029	MeJA induced 9h	2.072
SRR8749030	Uninduced	2.168
SRR8749031	Uninduced	0.398
SRR8749032	Uninduced	2.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.121
SRR8400027	Control - Root	4.514