Gene detail

Gene detail information of Glyur000136s00007905

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10160.1	5.00E-76	Thioesterase superfamily protein
NR	KHN33515.1	6.68E-133	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase [Glycine soja]
COG	YP_007141585.1	5.00E-46	3-hydroxyacyl-(acyl-carrier-protein) dehydratase [Crinalium epipsammum PCC 9333]
trEMBL	tr\|I1MDV8\|I1MDV8_SOYBN	6.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G05800.1}

Sequence

Transcript Sequence

>Glyur000136s00007905.1
AGATGCTCTCATTCCTTTATTATGGTTCCACAATCAACAATCAACAAACAGCGTGGGAGGCTCCGCCCTAACTGAAACTCAAATCAAAGGTAGCTGTTAGTACCCTCGTTTCTGTCGCCTTCTTCTGCCTTTCCCTTTACATTAATTTAGCTCAGAGACTCGCCATATACACTCAACTCAAATACTCAAGTGCAACTCGCCACTGTTAGTGTTAGGATAATAGGATTACAAGTTCCATAGCATCAAGTTTTCAGCAATGGCATTGGCACCCTCTGCTTTCTCCAACACACTGCTTTCTCCCATTTCCTCTCCATCTTCCAAACCCACTTCCCGTCAACCCAAATTTCCACTGGTCAAATTCCCCAACTCCAGATCCCATAATCCCATGCCTACTACCCGTTTGAGGAAAACGAAGCCACTAACCACGTTTTGTTCCTCNGATGCCGCTAATGCTCCTCAACAACAAGATACCCCCATTGAATTGAGGTATCCCGCATTCCCAACCGTCATGGACATCAATCAGATTCGTGAGATTTTGCCCCACAGGTTTCCTTTTCTGCTGGTAGATAGAGTGATTGAGTACAACCCTGGAGTTTCTGCAGTCGCCATAAAGNATGTGACAATAAACGACAACTTCTTCCCTGGACACTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTCATGGTTGAGGCAATGGCACAAGTTGGTGGTTTAGTTATGTTGCAACCTGAAGTGGGAGGCTCTCGTGAGANCTTCTTCTTTGCNGGAATAGACAAAGTGCGGTTTCGTAAGCCCGTGATTGCAGGAGACACCTTANTTATGAGAATGACACTTACTAAGCTGCAAAAGCGATTTGGAATAGCCAAGATGGAAGGTAAGGCATATGTTGGAGGTGAAGTTGTGTGNGAGGGTGAGTTTTTGATGGCTACAGGGAGCGGATAAGTATAGCATATTCCTTCCCACTGGAATTCAGTTGATTTTGCTGCATCTTTTAATTAAACGCTTCTGCTTTTGAATGCAGAACTTTGTGAACGTTTAATATATGCATTTTCAATGAAATCTATCTNAATATTTTGTTCTTCACGGTTTTCTTTGGTTGTTCAGACTATCTTTGATGGATGAACAAATCGGCATTTGACCTTTTGTTCTCTTATTCAGATTTGTTTTGNGAGTATTAATTTATGCATTCCAAGCATCTTTATCCTATTGCGTATGGCAAAGGTTAAACTTTAAATCCGTATTGGCTACACAGACATGTTCAAACACAAATTTTTCAAGTGTCCCATATCTTTCAGTGCACCGGATTTTAAGAAAGAAAAGGTAAATGCAAGTATTTATACGATGACTACNTCAAATCACAGACACAAGGTGAGTGCATCCAATATCAGAACATAGAATTTGAATTTGTCATGGGGTTACAAAACACAGGACAAAGGTTCATTTGCAAACTGTCTAGCTTCTCAAAGTTCAATTATCTACATGAATTGTTTTTGTTTACAAGCCAAGAGCGCCAAGGGGGGTCTTCCCTTGTCCAGCCTCAAAGTAGAAAGTCAGCATAGCCAACATAGCAATCCTGGCATGCTTAATCTCAGCAAGTTTCAATCTTTCTAGCTTTTCCCTATCTGGAATGTAAACCCCATCCTTGATGGTGCCAGCAAGGCCCAAAGGGTCAAAGAATTTTCCTCCTGGGTAGCCTTGATCGCCGGTGGCGTTGGCGAAGTTCTCAGCGGTTCTNGACCATGGAGTGGCCCATTCCACTGACTGTGAATCTGGGTTGAAGAAGTCCACCCATCTCTTGCTNTCTACCCACCCCATGAGAAGCAACTGAGTCCCCAGAAGAGAACCAAATGAGAAAGGAGCAATTGCATTGGGGTCAGCTCCAGCCTCAAACCATGGAACTCCACTCCATGCCTGCCCAACAAAGATGCCTACAACTGCAGCCATTGCCCACCTTCCATGAATGAGCTCAGCTTCTCTGTACCATTTGAGAAATGCTGGGTCCTTGCCTAGGCCTAGTGGGTCAAAACCATAGTCACCTGGTAGCCTGCAATTGAAACAACATTAAACATAGAACAATTCAATTTCTGAACTGAGAAGGGGAAAAGGAGAGAAATTTAGGTAGATGGGTGGACTCACGATCCATCGAGCCATTCTGGGTCAATGAGATTCCCACCACCTTTAACAGCAGGGATCCATGATTTCTTTGGTGCAGCAGCAGCAGCCACAATAAGTCTTTTAGGACTAACANAAGCACCAACTTTGCCTCCAACGGTAGTAGCCAGCAACAGGGTTTGGCTCCTATTTCCTCCACATAAGAAGGAAGATCCAAGGCCATTTAACACAGCACCAGATGTTGCAGCTGCCATCTCTCTCTTTTTTTGACTCTATAATAGAACTCTCTGGAGAGATTTTGTGAGAAAATGGAGGCTGTTTTTGACGTTCACTTTGCAATTGCACCACTTGGAGACTGTTTTATGTGTGAGTGGATGTGAAGTGGGAGAGAATCTAAAGGGGTTCTCGTAGAAGGCCAAGTAGGACAATGAAATCTGAAGAAGAAATCTTGAGAGCTATCGTGGATAGATTTCGGACCAATGGGAACTGGATCTCCATCCTCATCCATTTTGGCTTCCAACCACGTGGACACCTATTCTACTCCACTTTGGTCTTTCTATCTTTTGCTGTTGTCGATGTTTATAAAGATAATTTGGGAGACCAGCAGATCCAAACAAAACCAATTTAATGAAGCAAGATNTGTCTGGCCACAAATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	40223	44618	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02372	fabZ	EC:4.2.1.59	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biotin metabolism	map00780

Gene Ontology

biological_process
GO:0006633 fatty acid biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016836 hydro-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007905.1	PF07977.8	FabA	94	219	2.00E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.774
SRR1783600	control	22.027
SRR1783602	moderate drought stress	10.003
SRR1811619	moderate drought stress	9.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.389
DRR006520	Root Summer glycyrrhizin high producing strain	14.186
DRR006521	Root Winter glycyrrhizin high producing strain	25.299
DRR006522	Root Winter glycyrrhizin high producing strain	24.342
DRR006523	Root Summer glycyrrhizin low producing strain	6.813
DRR006524	Root Summer glycyrrhizin low producing strain	6.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	156.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	145.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.251
SRR2868004	Drought Stress (root)	13.012
SRR2967015	Control (root)	7.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	181.883
SRR9715740	Leaf	148.468
SRR9715741	Leaf	136.339
SRR9715739	Root	6.308
SRR9715742	Root	5.728
SRR9715743	Root	5.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.613
SRR8749028	MeJA induced 9h	5.804
SRR8749029	MeJA induced 9h	3.788
SRR8749030	Uninduced	3.587
SRR8749031	Uninduced	0.753
SRR8749032	Uninduced	2.346

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.768
SRR8400027	Control - Root	12.003