Gene detail

Gene detail information of Glyur000136s00007902

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64080.1	4.00E-32	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
NR	XP_003531043.1	6.90E-74	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080-like [Glycine max]
Swissprot	tr\|Q8VYI9\|NLTL5_ARATH	4.00E-44	Non-specific lipid-transfer protein-like protein At5g64080 (Precursor)
trEMBL	tr\|I1KR47\|I1KR47_SOYBN	3.00E-74	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07890.1}

Sequence

Transcript Sequence

>Glyur000136s00007902.1
CGCCGCTTTTGAATAAAGCACGACGCCAGCAACTACGGTTCACACTCACACACTGACACAGACGCACCGACTCTTTCTCTTCCTCTCTCTCAAAAATCCTATCTTTTTACAACCCAACCTCTCTTTAAATTCCCATCTTCAAAGCCCAAACCCCTCATTTTCATTCATCTAACGCCCCACCCCATTCCAGTATTCCACACCTCACTACTACTACATTNCCATTTTTCTTTCATGGCATCGACNAAGTTTTCACTCATTCTGTGCGTTGTTGTGGCCATCTGGGCCGTCGACCTGGCCCACGGCGCCTCATCACCAACACAGCATGCNCCATCACCCTCCGTGGATTGTTCAAGCCTTNTCCTCACCATGGCCGATTGCTTGTCGTTTGTTACAAACGACAGCACCATCACCAAACCCGAAGGGACTTGCTGTTCTGGCCTGAAATCTGTGCTTAAGAGTGCCCCTTCCTGCCTCTGTGAGGCTTTCAAGAGCAGCGCTCAGTTTGGTGTCGTTTTGAATGTCACCAAGGCTTTGACTCTTCCTGCCGCTTGCAAAGTCTCTGCCCCTTCTGTCACTAACTGTGGATTGTCTGAAACGCCTGCTGCTGCTCCTGGTGGAAGTCTCTCCCCAGAATCTTCTCCTACATCTGCTGCTGCTACAGCACCGGGTATGAACATTCCCATGAATAATGAGCCATCTTCAGCACCAGCAGTGGCACCATCTCCCGGGAGCGGGAATGGGAATGCAGCATCAGCATTGCTCCCCATTTCAGCTGGATCACTGTTTGTTTGCCTTTTAGCTGTGCTCTCCGTCCTTTGAGCATTGCATGTCTCGTTTCCATTTTGAGAGTAGGGAGATGATGACATGAGGGACTATCTATTTTGATGTTTACTCTGTGTATTAATTACCATTGAAGCTCTTCTTCTCATTCTATGTGTGACTCGAACCTACTCATATGTATATATATATGAGTAGTAAATTTAGCATTATCATTATATTATGTTGATAGGGATCTATTGATATGGGTGTGATCCGATTTGATTTCTTGTTTGACAAATACATGTGCCAGGAGTTATATGGTGTTGTGGTTAAACGGCTATAAAATAGAAGTTTAAATTAGTAACATGACCCTATAGTATAGATGGTGCTGGAGGCTTTTTTCTCATTTGGTTTTTATANGCACCACCACAAGTCCACAACTACCTTCCTTCGCAAAATTATTGGCTAGGCGTGGATACTAGTTAGCATGATGGGTTCGGGTGCTTTGACTGTAACTGTTTGATTGAGCTTTTAAAATTGATCTACTTTGGTATTTGATTTTAATTTTAATGGAGGTTTATTGACACTTTTTAAAAAAAACAAAATGATTTTTTTTTTTACCATCACATGGACAAAGATTTTAGAGGCTTTCAAGTCATTANCTGATATTTTGACTGCTAAACGAGACTATTTGATAGGCACTCCACACCCACAACATGTTGTGGTCCTTTATCTATGCCGAAAGCCATCCGTTTGTTGTCCACTTATCCGCGCGTGCGTGAGGAAAGATGATGAACGCATTACCACAATATTTTGCTATTCTTTATCGGGAGGCATATCTTGTGGTGCTTGTGGACCATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	27309	29719	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006869 lipid transport

molecular_function
GO:0008289 lipid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007902.1	PF14368.1	LTP_2	26	117	3.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.211
SRR1783600	control	6.331
SRR1783602	moderate drought stress	3.711
SRR1811619	moderate drought stress	3.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.043
DRR006520	Root Summer glycyrrhizin high producing strain	10.314
DRR006521	Root Winter glycyrrhizin high producing strain	3.299
DRR006522	Root Winter glycyrrhizin high producing strain	2.994
DRR006523	Root Summer glycyrrhizin low producing strain	9.709
DRR006524	Root Summer glycyrrhizin low producing strain	9.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.782
SRR2868004	Drought Stress (root)	13.751
SRR2967015	Control (root)	9.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.728
SRR9715740	Leaf	16.982
SRR9715741	Leaf	6.790
SRR9715739	Root	11.314
SRR9715742	Root	7.924
SRR9715743	Root	6.474

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.136
SRR8749028	MeJA induced 9h	18.819
SRR8749029	MeJA induced 9h	10.275
SRR8749030	Uninduced	3.865
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	1.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.162
SRR8400027	Control - Root	7.047