Gene detail

Gene detail information of Glyur000136s00007900

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22150.1	0	sulfate transporter 1;3
NR	XP_004485557.1	0	PREDICTED: high affinity sulfate transporter 2-like isoform X1 [Cicer arietinum]
COG	YP_005320855.1	2.00E-93	sulfate transporter [Saprospira grandis str. Lewin]
Swissprot	tr\|P53392\|SUT2_STYHA	0	High affinity sulfate transporter 2
trEMBL	tr\|D4IIB1\|D4IIB1_9FABA	0	Sulphate transporter {ECO:0000313\|EMBL:CBK55660.1}

Sequence

Transcript Sequence

>Glyur000136s00007900.1
ATGAGTCAGGTTTTTAGCGACGAGGCTGTGGCAAAGGCCATGGATGAAATAAGAAGCGGGTCTTCTTCACGTCGACATATTGGAGATCATGCTTTGCCACATTCTCACAAAGTGGGCACTCCTCCTAAACAGACACTTTTCCAAGAGATCAAACATTCTGTCACTGAAACTTTCTTCTCNGATGACCCTTTGAGCAAATTTAAGGACCAAACCGCAAAGAGAAAGTTTGTTCTGGGCCTGCAATCAGTCTTCCCCATTTTCGAGTGGGGAAGAGGTTACAATCTTAAAAAGTTCAAGGGTGATTTCATTTCTGGACTTACCATTGCAAGTCTCTGTATTCCTCAGGACATTGCATATGCAAAGCTTGCAAATTTGGATCCCCAGTATGGACTATATACCAGCTTTGTGGCTCCTCTTGTGTATGCTTTCATGGGAAGCTCAAGAGATATTGCCATAGGACCTGTAGCTGTGGTGTCCCTCTTGCTTGGGACTCTGCTTACCGATGAGATCAGTGACTACAAAAGCCACGAGTANCTGCGTCTCGCATTTACTGCTACCTTCTTTGCAGGAGTCACTCAAATGGCACTCGGAGTTTTGAGGCTTGGTTTCTTGATTGACTTCCTATCTCATGCTGCTATTGTGGGATTCATGGGTGGAGCTGCTATTACTATTGCACTGCAACAGCTTAAAGGTCTGCTTGGCATAAAAGACTTCACCAAGAACACTGATATTATTTCTGTCATGCGCTCGGTTTGGGGTTCAGTCCACCATGGGTGGAATTGGCAGACAATAGTCATTGGAGTGTCATTCTTGGCCTTCCTTCTTACAACCAAGTATATTGCTAAGAAGAATAAGAAACTCTTTTGGGTGGCTGCAATTTCTCCCATGATATCTGTTATTCTGTCTACTTTTTTTGTTTACATTACCAGGGCTGACAAGAAAGGAGTATCAATTGTGAAACATATTAAGAAGGGTGTGAATCCACCATCTGCTAGTGAAATTTATTTCAGTGGAAAATATCTTGGAGCTGGTGTTAGGATTGGTGTGATATCTGGTATGATAGCACTCACGGAAGCTGTGGCAATTGGGAGAACATTTGCTGCCATGAAAGACTATTCACTAGATGGTAACAAAGAAATGGTGGCAATGGGAACAATGAACCTTATTGGTTCGGTAACATCTTGTTATGTGGCCACAGGATCATTTTCTCGCTCAGCTGTGAACTATATGGCTGGTTGTCACACTGCTGTATCAAACATAGTTATGTCCATTGTGTTATTGTTAACTCTGGTACTCATTACACCGCTATTTAAGTACACCCCAAACGCGGTGCTTGCTTCGATTATTATAGCTGCCGTGATGGGCCTTGTGGACATTGAAGCAGCTGTTCTTCTGTGGAAGATTGACAAATTTGATTTCCTAGCTTGTATGGGAGCCTTCTTTGGTGTGATCTTCAAAAATGTTGAGATTGGCCTTCTAGTTGCGGTGGCAATATCTTTTGCAAAAATCCTTTTACAAGTGACAAGGCCAAGAACTGCAGTGCTTGGGAAGCTTCCAGGGACTAGTGTCTATAGGAACATCCAGCAATACCCCAAAGCAAACCAGGTTCCCGGCATGTTGATTATCAGGGTTGACTCTGCAATCTACTTCTCAAACTCCAACTATATCAAGGATAGAATTTTGAAATGGTTGACTGATGAAGAGGTCCTAAGGACAAGTAGTGAATTCCCCAGAATACAGTATCTCACTGTTGAAATGTCACCTGTTACTGATATTGACACTAGTGGCATCCATGCCTTTGAAGATTTATTGAAGAGCCTTCAGAAGAGAGATGTCCAGCTTCTTGTGGCAAACCCGGGGCCAGTTGTAACCGAGAAGTTCCATGCATCAAAGTTATCAGACTTGATTGGGGAAGATAAAATATTTCTATCAGTGGGTGATGCTGTTGCAACTTTTGGCCCAAAGGGTGGACAATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	16603	19964	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0005886 plasma membrane

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007900.1	PF13792.1	Sulfate_tra_GLY	84	165	2.20E-32
Glyur000136s00007900.1	PF00916.15	Sulfate_transp	196	474	1.40E-104
Glyur000136s00007900.1	PF01740.16	STAS	530	648	2.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.275
SRR1783600	control	0.266
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.280

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.463
SRR2868004	Drought Stress (root)	108.348
SRR2967015	Control (root)	129.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.431
SRR9715740	Leaf	2.603
SRR9715741	Leaf	3.556
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.377
SRR8749028	MeJA induced 9h	4.771
SRR8749029	MeJA induced 9h	1.570
SRR8749030	Uninduced	18.119
SRR8749031	Uninduced	18.083
SRR8749032	Uninduced	22.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.936
SRR8400027	Control - Root	2.426