Gene detail

Gene detail information of Glyur000136s00007899

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28660.1	3.00E-22	Chloroplast-targeted copper chaperone protein
NR	XP_007159084.1	7.42E-77	hypothetical protein PHAVU_002G207200g [Phaseolus vulgaris]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	3.00E-17	Copper transport protein ATX1
trEMBL	tr\|V7CNZ1\|V7CNZ1_PHAVU	3.00E-77	Uncharacterized protein {ECO:0000313\|EMBL:ESW31078.1}

Sequence

Transcript Sequence

>Glyur000136s00007899.1
TCTAGCTTCTCATCCCTAAAGATCCCAATGAGAAAATTAAAAAAAAAAGTTTGGTTAGAGAAAAATTAATAAAACAAGAAAATCCATGTTCGTTCATTCTGTTTTAATTAATAATCTGATATGTCTCTAACATGTCCCTTTTATCCATAGCAAAAAAGGGCTATTGTCAGTTTCTCAGCATTAACCTCTGAAAAGGACAGGATTTTGGACACGTTAAGATCATATTCATAAGTATATGCAAAATAGATAAAATGCCAAAAAGATTCCAAACTGTCAGTGAACCCATTGTTGGCCAATTCATAATGACAGTGTGTCTCTTCCCTTCTGTAGTCACTTTCTTCTCCCAATTAGAAAACCAGCAGTAGCATTAGAATATTATCATTATTATATCTTGACAACTTTTCCCCTCACCATTGATATTCCCCCTCACCCCTCCCCTTCAAAAAAATTTCTCTGTGGAAGTAACCTGTGAATTGATAGAATATGAGTCTGAGAAAAAGTGATAGTAAAATGAGGAGTGGAGGTTTCATGTGTCACTCACGGGCATCAACAGCAGTGTGCATGAGTACCCGCGATCCTCGGTCTGTGGTTGTTGTGCCTAGGACTAGGAGGCATCATCATGACAAAAGTGTGTTTTTTGATGATACCAGGTTGATCAACTATGCCAAGTACTCCAAACTTGTTGAGTCTCGCAGGTCCAATTCAGCTCCTCACAACAAATGCGTCTCTGTCTCTGTGCCAAACAACAAGCAGAGGAGCCAAGATCATGATGATCAACAGAATATAGAACCAAAGGAAGTTCAGAAAACACCAAACGATACTGTCTTTCAGGTGGTTGTGATGCGGGTTGCTATTCATTGTCAGGGATGTGCTGGTAAAGTGAAAAAGCATCTGTCTAAGATGGAAGGGGTTACATCATTCAGTATAGATGTAGAGTCGAAGAGGGTGACAGTGATGGGGCACATTTCACCAGTGGGAGTCCTTGAGAGCATTTCAAAGGTGAAAAGGGCTGAGTTCTGGAATTGTTAATTAATGCACTAAAGGGTGCCTTAAATGTTAGCATGCAGTGGAGATGCAGATTAGAGCCAGAGTCGAAGTGTTTTAGAAATTTGGCTTTAATTTACCTTCGCATTTGATCATGAGAACTTCTTTCTATATATGATGGTGGACCTGGAGTGGTGGTCCTCGTAGAATTTTCCTCATGTGACTAGGTAGTGAAGATTGTGATGTTCATAGGCAATTTAATGATATCTGTCACACCCCCACCCTCCCCCAAAAAAAAAAGGGAAAATTTTCCTTTCGCAATTTCCTTCTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00136	3948	6354	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000136s00007899.1	PF00403.21	HMA	120	174	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.420
SRR1783600	control	1.419
SRR1783602	moderate drought stress	2.559
SRR1811619	moderate drought stress	2.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.823
DRR006520	Root Summer glycyrrhizin high producing strain	0.768
DRR006521	Root Winter glycyrrhizin high producing strain	0.846
DRR006522	Root Winter glycyrrhizin high producing strain	0.827
DRR006523	Root Summer glycyrrhizin low producing strain	0.167
DRR006524	Root Summer glycyrrhizin low producing strain	0.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.022
SRR2868004	Drought Stress (root)	1.024
SRR2967015	Control (root)	1.095

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.801
SRR9715740	Leaf	9.270
SRR9715741	Leaf	5.851
SRR9715739	Root	0.000
SRR9715742	Root	0.540
SRR9715743	Root	0.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.115
SRR8749028	MeJA induced 9h	1.257
SRR8749029	MeJA induced 9h	1.651
SRR8749030	Uninduced	2.374
SRR8749031	Uninduced	1.652
SRR8749032	Uninduced	1.475

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.735
SRR8400027	Control - Root	3.612