Gene detail

Gene detail information of Glyur000135s00007323.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20930.1	0	Protein kinase superfamily protein
NR	XP_007141606.1	0	hypothetical protein PHAVU_008G210200g [Phaseolus vulgaris]
COG	NP_243370.1	3.00E-26	serine/threonine protein kinase [Bacillus halodurans C-125]
Swissprot	tr\|Q39238\|TSL_ARATH	0	Serine/threonine-protein kinase TOUSLED
trEMBL	tr\|V7B7P1\|V7B7P1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13600.1}

Sequence

Transcript Sequence

>Glyur000135s00007323.1
TTCTTATCTGAGAAGCATATAGGTAAGACTATCCTCAGAATAACAATACCTCACTAGATTTAAGAATTTCCAATCCCACATCACACATTCTAACACACACTAAATCCACATGTTATTTTGTTTTTGTTTTTTCACTTCTGATTTACCATTCTACCANAGTCCCAAAATTTTCACTCTTAGATACTGCTTTCCTCTGAAAAGCCCACATCAATTTCCAAAAGAAACACACACCATACTCACCCAGAAAAAAGCAGCCTTTATTACTACTCTATTGTTTCTCAGTCATGTTTCCTTCTCTCATGTGCCCAATACATCCATTCTTCCCTCCCAAGCTTTTGATTCTTCCACCTCTTGACCAAACTCAAAAACCCTAGATTCTCTATTTTTCCCCCAATCAACAATTAATTCTCTGAGTTCCTCACCCAAAAGATACTCAAAATTTTCCCTTTTTTTGCTTTCCCTCACACCCCATCTCAGTTCTCTGACCCTTTGATTTCTTCAACTGCTTCTGCTGTTTTCCCCTTTGCATAAATCCCCATTTCTTCNCGTGGGTCTCCAACAAATTTCCACCTTTTGCTCTCTGATCACGAATGGTTTTCTGTTACAGTAACAGCAACAATGTCGGATGACATGCTGGTGCATTTCTCTTCCAACTCTTCCAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCAAAGTTGGAAGCTCGCATGGTTGGAAAGGGTTCCTCCACCTCTGCTTCTCAGCAACCAAGTTGGTCTTCTGTTCCTTCTTCAGCTGGAAAATTCAGTGGAGTTGCTGAAGATTTGGCTGAACCATCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTCTTAATTCAAGCCAACACGCAGAAGCGCCTAAAACTTCAACAAAATGATAGCTCTAATGTTTTTGAACGTGTCGAGGTTGTTACTGACGGAAGACAAACTAGTTTGGAGGCTGTGGAGACAAAAGTTAATGTTGATGCGAATAGAAAGAAATCTGGCCGTGGAAGAGGGAGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAAATGTAATGATCAGACCAAGACACAAATTTCTCCTCCAACTGTTTCGGCTTCAAATGGTCAGATTGAGAATGTGTACCATAAAGATGGCAGACTCAAAGATCAGTTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGGTTGCATCTTTACGTGCAAAAGTCGTTGCGTTGGAGGAAGACTTGCGTAAATCAAAGCAAGAAACCTCTGAGTATCAGAATCTTAGTCAACAGCTAGAAAAGGAACTGAAGGACCTGAGAGATCATGAACAGCAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTTGGTGTAATCAGGGCTGGAACTGTCTTATCTGAGACCTGGGAAGATGGTCAAGCGTTAAAGGATCTGAATGCCCAGCTTAGACAACTAATAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAGTTACTTAAGAAAAAACAATCTGATAAGGGTGATGGAACAGAGGTGGAGGCTGGATTACCNGAAGATGTTCTCATTCATGATGAAATCTATAAGTCTCGACTAGCCAGCATTAAACGAAAAAATCTTCAGGAAGAAGAAGTTATTTTGCGGGAGAGGGATCGCTACGAACTAGAGAAGGGAAGGCTGATTCGTGAAATGAAGCGCATACGGGATGAAGATGGTTCGCGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCCCTTCTAAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAACAAAGTTACATGAGGCATGCAATTCGGGAGTATAATATTCACAAGACCCTGGTCCATCGCCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAAAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGGAAGGATCTCGATGCTGTTCTTAAAGCAACACATATATTGCCCGAGAGGGAGGCTAGGGTNATTTTAGTTCAGGTTTTTCAAGGCCTTGTTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGATGTGGGATCCCAGGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCTCTTATATCATCAAAGGTCAATAATTTTTCAAGTTGTTGACGTCTGGTCTGCTGGTATTTTGTTCTATCAAATGCTCTTCGGCAAACGTCCTTTCGGACATGACCAAACACAAGAGAGAATACTTCGAGAAGACACGATTATTAAGGCACGCAAGGTTGAATTTCCCCCTAGACCTGCTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGGTGTCTAACATATAACCAGGCTGAGAGACCAGATGTATTAACCATTGCTCAAGATCCATATCTCACTTACTCAAAGAAGTAATGGCGTTCATTCACATGGCTTTACACCACCACAAAGAGCATGGGGAATCTCATCTTCTAACTTCAGTTACTAATCATCTGTCAGGTTTTGTATAGGTTGTAAAGATTTTGTAATCTTGTCAAATGAGGCAGAGAGGATGTTTTCCCCAATCTGAAAGGCAAGTCCAGTTGTCTTCATGCATTTATGTTTTTGGGTTCAAAATATTGGATTGGAGCAGCAAAAGGCAAGTAGGTTTTGACTTGACCTTAAATGGGTCAGGATGTATAGGTCCTCACAAGTGAAGAAGGCTTTTGTGATTTTTTTTCATTACTCTTCTTGCACCCAAATTATAGGATTTTAATGCATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	266641	274771	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.4.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007323.1	PF00069.20	Pkinase	406	672	1.00E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.280
SRR1783600	control	14.348
SRR1783602	moderate drought stress	13.263
SRR1811619	moderate drought stress	13.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.407
DRR006520	Root Summer glycyrrhizin high producing strain	17.072
DRR006521	Root Winter glycyrrhizin high producing strain	23.489
DRR006522	Root Winter glycyrrhizin high producing strain	22.936
DRR006523	Root Summer glycyrrhizin low producing strain	19.075
DRR006524	Root Summer glycyrrhizin low producing strain	18.847
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.173

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.100
SRR2868004	Drought Stress (root)	23.729
SRR2967015	Control (root)	23.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.531
SRR9715740	Leaf	12.373
SRR9715741	Leaf	16.205
SRR9715739	Root	2.828
SRR9715742	Root	13.588
SRR9715743	Root	10.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.017
SRR8749028	MeJA induced 9h	11.076
SRR8749029	MeJA induced 9h	7.564
SRR8749030	Uninduced	7.532
SRR8749031	Uninduced	6.261
SRR8749032	Uninduced	4.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.851
SRR8400027	Control - Root	24.025