Gene detail

Gene detail information of Glyur000135s00007322

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34570.1	5.00E-73	PIN domain-like family protein
NR	XP_003545538.1	4.35E-172	PREDICTED: rRNA-processing protein UTP23 homolog isoform X1 [Glycine max]
trEMBL	tr\|I1M7D5\|I1M7D5_SOYBN	2.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G04920.5}

Sequence

Transcript Sequence

>Glyur000135s00007322.1
GGACGAGGATACCCTTTGCCCTCGTTTCGCGCTTTCTCTTCTCTCGCGAGTTGGGCTGATTTCGATTTTCTAGCACACACACACACTTAGTCGAAGAATTCGATCGAAGAATCGCGCTTCCATAATCACACAAGGGGATTCTCCACTCACTGTGCTGCGTTTCAGCGTAGAACTCGTATAGATGAAGGTTAAAAAACAGAAGAGACATAGGAAGAGTTTGACGTTTTACACTGCTTGCTTTGGTTTTCGGAAGCCTTTCAAAGTTATTTGTGATGGGACATTTGTGCATCACCTTCTTGTGAATCGCATAATCCCTGCTGACAAGGCCATTGGCAACATTCTCAGTGCTAATGTGAAGCTCTACACGACAAGATGTGTTCTAGCTGAGTTGAAGCGACTTGGTAGCTCATATTCCGAGGCTCTTGAGGCAGCTCATAAACTTATAATTGCAAGATGCGAGCATGATAAATGTGTGAGGGCAGATGCCTGCATCATGGAGGTTGTGGGAGAAAATAATTCCGAGCACTTCTTTGTTGCTAGTCAGGACACTGACCTGCGAAAGAAGTTGCAAGAGATACCTGGTGTGCCCCTCATATTTGGTCTCAGAAACGCTCTTTTCCTTGAATCTCCATCTGCATTTCAGCGGAAATACGCCTCAACTTCTGAAGAAGGACGATTGCATATGACCGAGAAAGAGTACCAGATACTTAGGGATAGGACAATGAATAGATTGGCTGGTGATGAAGCTATAAATTCCAATACTGAAATAATGGAAAATGAGGATTCTGGAGATCAAACTGGAATTGTGCAGGCAGTAAAAAGAAGTATTAATTCAAGGAATCAGATGGGCATCAAGGATAAACCTCAGTTCAAGAGAAAAAGAGCAAAGGGCCCAAACCCACTTTCGTGCAAGAAGAAGAAAAGCCATGAAAACCAAAATAATCCTTCGAAGGAAATGAATGGAGACAACACAGCGAAGAGAAGCAGGAAAAGGAAGAGGTCACGTAAACAGCAGATGCCAGCGGAAACAGGCAGTTAGGTAGATGATTAGGTATTTATAGAAGAGTTCCTTGAGTTTGCTGATGATGATGAGTGAAGAGAGAGCCAAATTTTGATTCATGTTGGCATGGCAGGGGAAATTACACTGGTTTTTTTGCGGTTGTTTCTATTTTGTGACCAAAATTCATACAAGTAATTATAAATGGATTATCATAGTATGTAATTGAAGTTTTCGGATATCCAATCGTAGTAACCGGTAACCCGTAAACATAGTGCTATGCCTCTTCAACTAGTAACCATGTAGGCTAGTTAGTGAGTGTGCTTAACTTCAGCTTCTCTTGTTGCTGTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	260786	265711	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0032040 small-subunit processome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007322.1	PF04900.7	Fcf1	52	150	7.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.932
SRR1783600	control	13.910
SRR1783602	moderate drought stress	14.338
SRR1811619	moderate drought stress	14.294

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.168
DRR006520	Root Summer glycyrrhizin high producing strain	33.755
DRR006521	Root Winter glycyrrhizin high producing strain	55.025
DRR006522	Root Winter glycyrrhizin high producing strain	53.744
DRR006523	Root Summer glycyrrhizin low producing strain	25.632
DRR006524	Root Summer glycyrrhizin low producing strain	25.559
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.925
SRR2868004	Drought Stress (root)	19.964
SRR2967015	Control (root)	19.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.430
SRR9715740	Leaf	20.662
SRR9715741	Leaf	20.068
SRR9715739	Root	1.617
SRR9715742	Root	10.380
SRR9715743	Root	10.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	42.751
SRR8749028	MeJA induced 9h	15.050
SRR8749029	MeJA induced 9h	28.238
SRR8749030	Uninduced	20.664
SRR8749031	Uninduced	15.163
SRR8749032	Uninduced	12.667

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.284
SRR8400027	Control - Root	23.896