Gene detail

Gene detail information of Glyur000135s00007319

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27170.2	0	Structural maintenance of chromosomes (SMC) family protein
NR	XP_007138299.1	0	hypothetical protein PHAVU_009G196800g [Phaseolus vulgaris]
COG	YP_004641887.1	1.00E-106	auxin-induced protein PCNT115 [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	0	Structural maintenance of chromosomes protein 3
trEMBL	tr\|V7B098\|V7B098_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10293.1}

Sequence

Transcript Sequence

>Glyur000135s00007319.1
TTCGAATCCGACGTTTTTTTGGGTAGGATTGAGGAAAGCAAAAAACAAAAACGGAAATATTTTTCCCAATTTTTTCCGCGCTCTTTTCCCCCCTCGTTCCCTCCACGTCTGCCCGAACCATATAAGGTGCTAAAGTTCACCCTTGTGGCGCACGGCTTATCCTTCGCACCCCAAAACACCGCAATAAACAAAATCAAAAAGCAGAAGGCTTCCACTTCAAACTTGGCTACTCCATCCATTGTACTGAACTTCCTCTGAGACTGAGGTACGGTTATGACAGTTTCAACATGTACATCAAGCAGGTTGTGATTGAAGGTTTTAAGAGTTACCGAGAGCAAATTGCAACAGAGGCTTTCAGTCCTAAAGTTAATTGTGTTGGAACCACAAAATTAAAAATGGCTGCAACGCAGACTGGGCTAATTCCTCGTGTTACACTTGGAACCCAAGGCTTTGAGGTTTCAAAATTGGGGTTCGGGTGCATGGGCCTTAGTGGAGGCTACAATGATCCCCTTCCTGAAGAGGATGGTATATCCATTATTAAGTATGCATTCAATAAAGGGATCACTTTTTTTGATACTGCTGATGTTTATGGAGCCGGTGCAAATGAAATCTTGGTTGGAAAGGCTTTGAAGCAGCTACCTCGAGAAAAGATCCAGCTTGCCACAAAATTTGGTGTCGTGAGAATAGATATTTCTTCTGGTGCGCTAGTCAAGGGTTCGCCAGATTATGTGCGCTCATGCTGCGAAGCTAGCTTGAAACGTCTTGGCGTTGAGTACATTGATCTCTATTATCAGCACAGAGTGGACACAACAATACCTATAGAGGAAACAATAGGTGAACTTAAGAAACTGGTGGAAGAGGGAAAGGTCAAGTATATTGGATTATCTGAAGCCAGCCCAGATACAATAAGGAGAGCACATGCGGTTCACCCCATCACTGCTGTACAAATGGAGTGGTCCCTCTGGACCCGTGACATTGAGGAGGAGATAGTTCCTCTCTGCAGGGAGCTTGGTATTGGAATTGTACCATATAGTCCTCTTGGTCGTGGCTTTTTTGGCGGCAAAGGAGTTGTGGAAAATGTTCCTGCAATTAGCTATCTGGCTAGACTTCCTCGCTTCCAAGCTGAGAACATGAACAAGAACAAGAATCTATATGATCGAGTTGAAAATCTTGCCAAGAAGCATGAGGCCACTCCTCCTCAGTTGGCATTAGCATGGGTTCTCCAACAAGGCGAGGATGTTGTGCCTATTCCTGGAACAACGAAGGTTAAGAACCTGGATCAAAACCTTGGTGCCTTGGCTGTGAAACTATCAGAAGAGGACCTGCAAGAAATTTCCGATGCAGTTCCCATTGATGATGTGGCTGGTGGTAGAACCTACCGTGGGATGGATCAGTTTTGCTGGAAGTTTGCTAACACACCTCCAAAAGGCTCAAGGCCGGAAGAAGAGAGCGAGGGTAGAAGAGGGAGAAAGAGAGAGGCAGTAGCCACCCCTCTCCGCCGTGTCGCGCCTTTGCCGGCCACCGCCGCGAGAGACGGTCGCCGGTGGTCTTCTCTCCTCAACAGAACAAGAACCAGTGACTCGAAAACCCTGCGGCCCATTAGTGACTCTCAACAACCACTACTGCGCAACCTCGCCGGAAAACTGCTTCCTACGACGTCATCGCCGTGGGTACCGGAGGGGAGATGGACAGTGACGTACATTGCTACGGAAAGATTTTTAGAAGAAGAAGAAGAAAAAGAAGAAGAGTGGTACAACTACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGGGAGTGGAAATTTTGTAGAGGAATAGAGAAACACAAATATGGGAGATATTCCTCGAGTGAAGCTGGGAAGGCAAGGCCTGGAAGGTTTTCCAAGTTGGGATATGGGTGCATGGGCCTCACCGGAGTGTATAACGCTGCTGTTCCAGAAGAGGACGCCATCTCTTTGATCAAGTATGCTTTCAGCAAGGGAATCACCTTCTTTGACACTGCTGATTTTTATGGAACCCATGTCAATGAAATTCTGGTCGGAAAGGCGCTCAAGGACTTACCTCGAGATCAAATTCAGATTGCCACAAAGTTTGGGATTGTCAAAATGGAATCTAATAATGTTATTGTAAACGGTTCCCCTGAATATGTTCGATCCTGTTGTGAGGGTAGCCTCCAACGACTTGGGGTGCAATACATCGATCTCTATTATCAGCACCGCATTGACACCACAGTACCCATTGAGGACACTATAGGAGAGCTTAAAAAGCTGGTCCAAGAGGGAAAGATTAAGTATATAGGATTATCTGAAGCGAGTACCGACACAATCAGGAGGGCACATGCTGTTCATCCCATTACTGCCGTCCAAATGGAGTGGTCCCTTTGGACTCTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTCCATGCCATTCGTTTTGTATTGAGTGATCTCTTTCAGAACCTACGCAGTGAGGATAGGCATGCACTACTCCATGAAGGGGCTGGNCACCAGGTCTTATCTGCATTTGTGGAGATTGTGTTTGATAATTCAGACAATCGTATCCCGGTGGATAAGGATGAAGTGCGCCTGCGCCGGACTATTGGTTTGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATATCAAAAACTGAAGTTATGAATTTACTGGAAAGTGCTGGGTTCTCTCGCTCGAATCCTTATTATGTTGTACAACAAGGAAAGATAGCATCTCTAACCTTGATGAAAGACTCGGAACGACTGGATTTACTTAAGGAAATAGGTGGTACTAGAGTTTACGAGGAGAGGCGTCGTGAAAGTAACAAAAGAAAACAAATAATCCAAGTTGTACAGTATTTAGATGAGCGGTTGAAGGAACTAGATGAGGAGAAAGAGGAACTTAGAAAATATCAGCAGCTTGACAAGCAGAGAAAATCCTTGGAATATGCCATTTATAGCAAAGAAGTTCAAGATGCTCAGATAAAACTTACAGAGATAGAAAAAGATCGGACCAAGGTTTCTGAAACATCGGCAAAGAATTATAATGATGTTCTTGATAAACACGAGAAATCTAAAGATTTAGAGAATAAATTGAAAGATTTAACAAAAGAACTTCAAAACTTTAACAAGGAGAAAGAAGTTATTGAAGAGCGACGAACAGAGGCATTAAAGAAGCACACAGAGCTTGAGCTTGATGTCAAAGACTTACAAGAGAAGATCTCTGGAAATATCCGAGCCAAAGAAGATGCTGCAAGACATCTGGAGATACTTGAGAAAGAAATTCAAGACTCAATGGATGAACTGGACAAAATCAGTCCTTTATATGAGGATCAAGTTAAGAAAGAAAAAGACATTACCAAACGAATAATGGAGCGTGAGAAGAAACTCAGTATACTTTATCAAAAGCAAGGACGTGCAACCCAGTTTTCGAGTAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAACGGGAGCAAAAGCTTAAGGAAGAAATTCAACGGCTTAATGGTGAATTAAATGATTGCGACGAATACATCAAGAGCCGTAAAACAGATATTACTACTTTGGAATCTGTNATTGCTCAGTCACGCGAAAGACTTAATCATCATAAAGTGGAAAGAGACAAGTTACAGGATGAGAGGAAGTCCTTATGGGGCAAAGAGAATGAACTTATTGCTAAAATTGATAAGCTGAGAGCTGAAGTTGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCCGGTGATGTGAGAAGAGGGTTAAATTCAGTTCGGAAGATCACCAAAGAGTATGGGATTTCTGGAGTTCATGGTCCAATTATTGAGTTGCTGAGTTGTGAAGATAAATATTTCACTGCAGTTGAAGTTACTGCAGGAAACAGCTTATTTCATGTGGTTGTTGAAAATGATGATAAGTCAACCCAGATAATTAGACATCTTAATTCACAGAAAGGTGGACGAGTTACGTTTATTCCACTTAACAGAGTGAAGGCTCCACACATTACTTATCCACAGAGTTCCGATGTCAAACCTCTTCTAAATAGATTGGAGTTTAATCCTGACTATACTCCAGCATTCAGTCAGGTATTTGCTAGAACAGTTATTTGCAAGGATCTGGATGTGGCTTCACGGGTTGCTCGTACTGATGGTTTGGACTGCATAACAATGGAAGGTGATCAAGTAAGCAAGAAAGGTAGTATGACCGGAGGATTTTATGATCACAGGCGATCAAAATTGAAGTTTATCAAAATCATTAAGAAGAATACAAACGATATTCACATCTCACGGATAGACCAGAAGATTAATGAACTTGTTGCTGAGCAGCAGAAGATTGATGCTGAGCGTGCTCTTGACAAATCAAAGATGGAACAGCATAAGCAAGACATTGCTAATTCTAACAAACAGAAGCAATTGCTTTCTAAAGCACTTGCAAAGAAGGAGAAGTCACTTGTTNATGTCCAGAATCAGATTGAACAGCTCAAGGCTAGCATGGCAATGAAAAAAGCTGAGATGGGNACAGAGCTCATTGATCATTTAACACCAGAGGAAAAAAAGCTTTTGTCAGATTTGAATCCTGAAATCGAAGACCTAAAAGAGAAGCTTGTTTCTTGCAAGACTGATCGCATTGAGACTGAAGCACGGAAAGCAGAGCTGGAAACTAATCTAACTACCAACCTTAGGAGAAGAAAACAAGAGTTGGAGGCTGTAATATCATCTGTGGATGCTGACACTTTGGTTGTTGATGCTGAATTGAAGGGGCAGGAACTTAGCGATGCTAAACTATTGGTTGATGATGCATCAGAGCAGCTTAGAAGAGTTTCTGAAAGTATAAATGATCGAACAAGGCAAATTAAAATGAACAAAGATGAAATGAATAAACTGAAGACTTCGGTGGATGAGTATGAAAAAAAACTTCAGGAAGAAGCAAAACAATTGGAGCAATTGCTGAGTAAAAGAAATATATATTCTGCTAAAGAAGAAGAGTATGCCAAGAAAATAAGGGAACTGGGCCCATTGACATCAGATGCTTTTGAGTCGTACAAACGGAGGAATCTCAAAGATTTGCACAAAATGCTGCACAGGTGCAATGAACAATTGCTACAGTTTAGTCATGTAAACAAGAAAGCGCTTGACCAGTACATAAATTTCACAGAACAACGAGAAGAACTTCAGAAAAGACAAGCTGAACTTGATGCAGGAGATGAGAAAATTAGAGAGCTAATATCAGTGCTAGATCAACGGAAGGATGAATCAATAGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGAGAAGTATTTTCTGAACTTGTGCAGGGGGGCCATGGTCATCTGGTTATGATGAAGAAGAAGGATGGTGATCATGATGATGATGACCAAGACGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAAAAGTACATTGGAGTGAAAGTGAAGGTCTCTTTTACTGGACAAGGGGAGACACAGTCCATGAAGCAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTTACACTTATCTTTGCCATACAGCGATGTGATCCGGCCCCCTTTTATCTATTTGATGAGATTGATGCAGCACTGGATCCACAGTACAGAACTGCAGTTGGAAATATGATCCGACGGCTGGCAGACATAGCAAACACTCAATTTATCACGACAACATTCCGCCCAGAGCTAGTGAAAGTTGCTGACAAGATATATGGAGTGACACATAAAAACAGGGTCCATGAGGAAGATCTTGGAATACTGGTTGATAATATTCGAATATACATTTATTTGATTCTTGTGCTTTAA

Protein Sequence

>Glyur000135s00007319.1
MYIKQVVIEGFKSYREQIATEAFSPKVNCVGTTKLKMAATQTGLIPRVTLGTQGFEVSKLGFGCMGLSGGYNDPLPEEDGISIIKYAFNKGITFFDTADVYGAGANEILVGKALKQLPREKIQLATKFGVVRIDISSGALVKGSPDYVRSCCEASLKRLGVEYIDLYYQHRVDTTIPIEETIGELKKLVEEGKVKYIGLSEASPDTIRRAHAVHPITAVQMEWSLWTRDIEEEIVPLCRELGIGIVPYSPLGRGFFGGKGVVENVPAISYLARLPRFQAENMNKNKNLYDRVENLAKKHEATPPQLALAWVLQQGEDVVPIPGTTKVKNLDQNLGALAVKLSEEDLQEISDAVPIDDVAGGRTYRGMDQFCWKFANTPPKGSRPEEESEGRRGRKREAVATPLRRVAPLPATAARDGRRWSSLLNRTRTSDSKTLRPISDSQQPLLRNLAGKLLPTTSSPWVPEGRWTVTYIATERFLEEEEEKEEEWYNYERERERERERREREREREWKFCRGIEKHKYGRYSSSEAGKARPGRFSKLGYGCMGLTGVYNAAVPEEDAISLIKYAFSKGITFFDTADFYGTHVNEILVGKALKDLPRDQIQIATKFGIVKMESNNVIVNGSPEYVRSCCEGSLQRLGVQYIDLYYQHRIDTTVPIEDTIGELKKLVQEGKIKYIGLSEASTDTIRRAHAVHPITAVQMEWSLWTLGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKDEVRLRRTIGLKKDEYFLDGKHISKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIYSKEVQDAQIKLTEIEKDRTKVSETSAKNYNDVLDKHEKSKDLENKLKDLTKELQNFNKEKEVIEERRTEALKKHTELELDVKDLQEKISGNIRAKEDAARHLEILEKEIQDSMDELDKISPLYEDQVKKEKDITKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLEREQKLKEEIQRLNGELNDCDEYIKSRKTDITTLESVIAQSRERLNHHKVERDKLQDERKSLWGKENELIAKIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKITKEYGISGVHGPIIELLSCEDKYFTAVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKAPHITYPQSSDVKPLLNRLEFNPDYTPAFSQVFARTVICKDLDVASRVARTDGLDCITMEGDQVSKKGSMTGGFYDHRRSKLKFIKIIKKNTNDIHISRIDQKINELVAEQQKIDAERALDKSKMEQHKQDIANSNKQKQLLSKALAKKEKSLVXVQNQIEQLKASMAMKKAEMGTELIDHLTPEEKKLLSDLNPEIEDLKEKLVSCKTDRIETEARKAELETNLTTNLRRRKQELEAVISSVDADTLVVDAELKGQELSDAKLLVDDASEQLRRVSESINDRTRQIKMNKDEMNKLKTSVDEYEKKLQEEAKQLEQLLSKRNIYSAKEEEYAKKIRELGPLTSDAFESYKRRNLKDLHKMLHRCNEQLLQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADIANTQFITTTFRPELVKVADKIYGVTHKNRVHEEDLGILVDNIRIYIYLILVL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	235991	260552	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0007064 mitotic sister chromatid cohesion

GO:0051276 chromosome organization

cellular_component

GO:0005694 chromosome

GO:0008280 cohesin core heterodimer

molecular_function

GO:0003682 chromatin binding

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007319.1	PF00248.16	Aldo_ket_red	59	351	9.80E-79
Glyur000135s00007319.1	PF00248.16	Aldo_ket_red	539	706	1.30E-46
Glyur000135s00007319.1	PF02463.14	SMC_N	707	1826	9.40E-40
Glyur000135s00007319.1	PF06470.8	SMC_hinge	1182	1293	6.70E-31
Glyur000135s00007319.2	PF00248.16	Aldo_ket_red	50	217	8.80E-47
Glyur000135s00007319.2	PF02463.14	SMC_N	218	1338	1.10E-40
Glyur000135s00007319.2	PF06470.8	SMC_hinge	693	804	4.60E-31
Glyur000135s00007319.3	PF00248.16	Aldo_ket_red	50	217	8.80E-47
Glyur000135s00007319.3	PF02463.14	SMC_N	218	1334	8.30E-40
Glyur000135s00007319.3	PF06470.8	SMC_hinge	693	804	4.50E-31
Glyur000135s00007319.4	PF02463.14	SMC_N	65	1127	4.10E-19
Glyur000135s00007319.4	PF06470.8	SMC_hinge	482	593	3.70E-31
Glyur000135s00007319.5	PF00248.16	Aldo_ket_red	59	351	6.30E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.558
SRR1783600	control	15.601
SRR1783602	moderate drought stress	22.757
SRR1811619	moderate drought stress	22.755

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.205
DRR006520	Root Summer glycyrrhizin high producing strain	21.450
DRR006521	Root Winter glycyrrhizin high producing strain	24.533
DRR006522	Root Winter glycyrrhizin high producing strain	23.842
DRR006523	Root Summer glycyrrhizin low producing strain	19.989
DRR006524	Root Summer glycyrrhizin low producing strain	20.818
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.744
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.782
SRR2868004	Drought Stress (root)	73.819
SRR2967015	Control (root)	40.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.852
SRR9715740	Leaf	26.514
SRR9715741	Leaf	32.946
SRR9715739	Root	2.151
SRR9715742	Root	6.316
SRR9715743	Root	5.402

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.202
SRR8749028	MeJA induced 9h	81.460
SRR8749029	MeJA induced 9h	42.145
SRR8749030	Uninduced	110.191
SRR8749031	Uninduced	149.975
SRR8749032	Uninduced	53.220

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.223
SRR8400027	Control - Root	32.821