Gene detail

Gene detail information of Glyur000135s00007315.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73080.1	0	PEP1 receptor 1
NR	AET00007.2	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_004775215.1	6.00E-56	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P93194\|RPK1_IPONI	0	Receptor-like protein kinase (Precursor)
trEMBL	tr\|G7KHF5\|G7KHF5_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AET00007.2}

Sequence

Transcript Sequence

>Glyur000135s00007315.1
ATGACTAGAACTTGTAGTAGCACTAGTATCATTATCACACTCTTGTTGTTGCTTTTTAATTCTTTCTTGCATGGTGCTTCTTCTGCTCTTGTATCTGATGGGGTGACTCTGTTGTCACTCTTGAAAAAATGGACCTTTGTTCCTCCTATCATCGACTCCAGCTGGAATGCCTCTGATTCCAATCCATGCTCATGGGTTGGTGTTCAATGCGACCCTGCCCACAATGTGATTTCCCTTAACCTCACTCATCATGGGGTTTTTGGTCAACTTGGACCAGAAATTGGAAACTTGTATCACTTGCAGACCCTTGTGTTGTTGGGCAATGGTTTCTCTGGAAAAGTGCCTTCAGAGTTAAGCAACTGCAGATTGCTCGAGTATTTAGACCTTTCTGGGAACAGTTTCAGTGGAAAAATACCATATAGCTTGAAAAGGTTGCAAAATTTAAAGCTTCTGAGATTGTCTTCCAATCTGCTGACCAGTGAGATTCCAGATTCATTGTCCCAGATACCTTCCCTAGAAGAAGTGAGCCTGCATAGTAACTTACTTAGTGGTCCTATCCCAACCAATATTGGAAACGCGACTCGACTATTGAGGTTGTATCTATATGGTAACCAGTTATCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAGATTAGAGGACCTTGAACTGTCTTTCAACCGCTTGACAGGTGAAATTCCGGTCAGTATTTGGCGAATTCCAAGTCTTGTGCACATCTTGGTTCAAAACAACAGCCTATTTGGGGAACTGCCTTCAGAGATGACCGGGCTCAAGAATCTGAAAAATATCTCATTGTTTGACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCTTAGTGAAGTTGGACTGTATGAATAATAAGTTCACTGGTAACATCCCGCCGAATCTTTGCTTTGGGAAGCAATTGCGCGAGCTCAATATGGGAATGAATCAACTTCAAGGTGGCATACCTTCTGATGTAGGAAGATGTGTAACTCTAAGGAGGTTGATTCTCAGAGAAAATAATTTCACTGGGTCTCTTCCTTATTTTGAAAGTAATCCGAATCTTCGATACATGGACATTAGCAAGAACAACATCAGTGGATCAATTCCATCAAGTTTGGGAAATGGCACAAATCTCACTTACATTAATTTGTCAATGAACAAGTTTTCCGGGCTCATACCATCAGAGCTTGGAAGGCTTGTGAATCTTGTGATTTTGAATCTTGCTCACAACAACTTGGAAGGTCCTTTGCCACCTCAGCTGTCAAATTGCACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGTTCGTTCCCATCAAGCTTGAGAAGCTGGATAGGGATTACCACATTGGTTTTAAGAGAGAATCTTTTTACAGGGGGTATCCCAGACTTCTTTGCAGAATTTAACAACCTTCGCGAGCTACAGCTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCGATCACTAGGAACATTGAGTAATCTGTTCTATGGGTTGAATTTGAGTGCTAATGGATTGACAGGTGGCATCCCTTCTGAAATCGGGAAGTTAGAATTGCTGCAAAGTTTGGATTTATCCTTGAACAATTTGACAGGAAGTATAGATGTTCTTGATGGTCTTGTTTCATTAATTGAGGTCAATATTGCTTACAATTTCTTCAATGGCTCCGTACCAAAAAATNTGGTGAAGTTATTGAATTCATCCCCATCATCATTCATGAGTAATCCTCTCCTATGTGTTAGTTGCTCGAGTTGCACTAAAACTAGTTATGTGAAGCCATGTGTCTACAAATCAACGGATCACAATGGTATCAGTAAATTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTCATTTCTGCCATGCTGCTAATAACAATTCTAATGCATCTCCATAGAAAGGAATCAAAAAGGGCCTCCCCTCTTAAGCAATGGTCTTTTATTGAAAGAGGAGGAGGAAGGATTGGATTCATATATGAGCGTGAAGTAAAGATCTTGGCTGAAAATAGGTCGTCTTCCCTTCAGGACCTAGTGTTGGAGGCTACAGAGGACCTAAATGAAAGATATGTTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCCATCCTTGGTCAACAGGTTTTTGCTGTAAAAAAGGTTGAATTTGGAAGGAACAAGCAAAAGCGCCTAAGTAACATGTGCAAAGAAATTAAAATCCTTGGGATGTTTAAGCATCGAAATTTGCTCACATACGCGGACTACTGGATCGGAGAAGACTATGGTCTAGCCTTATATGAATTCATGGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCCCCACCACCCTTAACATGGAATGTCCGGTTTAAGATAGCTGTTGGAATTGCTCAAGGACTAGCATATCTTCATTATGATTGTATACAACCGATAGTTCACCTAGACATCAAACCAAGGAATATACTTCTTGATGCCGATATGGAGCCTATCATAGCTGATTTTGGTACTGCCCTATACAGGAAGTTGTCTGAGCATTCTTACAGTCATTCTGAAACCAGGCAAATGCTTTCATCGCGCGTTGCTGGTACCCCTGGATATATTGCACCAGAGAATGCATATGCAATAGTACAGAGCAGAAAGTCTGATGTATATAGCTACGGAGTCGTTTTGCTTGAGCTAATAACCAGAAAGAAAGTGTTAGTTCCATCATTGAATGATGAGTCAAAGGTGACCAACTTAGTGAGCTGGGTTAGATCTGTATGGCTGGAATCAGGCAAAATTGAGAACATTGCTGATTCTTACCTTGCAAGTGCATTTGCCAATTCAGCAGCACTAGTCAAGCAAGTCACTGCAGTGCTTTTATTGGCATTACAATGCACAGAGAGAGATCTGCGGAACAGACCAACCATGGATGATGTTATTGGCTTCTATAACAAGGCCTTGTTTAAGTGGTGTGAGGAGGGAAATTATGGTGATGAAGTTGTTGCTAATATAGCACCACAACCATATGGCTCTTCTAATCTTTTCCCTGATGTTCCAGTTGTTGATCACCATCTCCATGGAGAAAGTCACAGAGCTGCATCCCAGAGACAAAGAGAAGTTACATTTAATGCAGAGACTGAACCTGAAGGTTATAGTGATTTTAGCTTTTGGCAGGATGCTAATCAATTTCAGCCGCGAGTCTATCATGCTTTGGATGATTGGAAACTCATGTCTAGACCTGCAACTGTTATTGATGGACTTATAATTGAAGTAATGCGCAATGGTAAGATACAGGCTGAACAAGTATTGGTCGCTGCTCTAATTGTTCCAACAATAACCTTTGCTTGGCCTAGCTTGGTCTTCTTGCCTTCTGTCACTGGTCCAGTACTCACCAAACCTTTCAATTGGTTTTTCCTCTTGCATTGCACTCAATATATGCACCTCCAGACATCATTGTATTCACAGCTCAAATCATACTTTATAAATGTCAATCAAGGCCACTTAGTGAGTGGCCATGGAAGAATTCAAAGGTCCTATAAAGCCAAAACTCTTCAATTTTTGGAACACGGAGAAACAAATGACCAAATGCAAAAGATGACTGGGTCTCTTCCTGATTATGAAAGTAATTTAAACCTAAGATACATGGACACGAGCAAGAACAATATCAGTGAACCAACTCCATCAAGTTTAACGTCTCATACCATCATAGCTTGA

Protein Sequence

>Glyur000135s00007315.1
MTRTCSSTSIIITLLLLLFNSFLHGASSALVSDGVTLLSLLKKWTFVPPIIDSSWNASDSNPCSWVGVQCDPAHNVISLNLTHHGVFGQLGPEIGNLYHLQTLVLLGNGFSGKVPSELSNCRLLEYLDLSGNSFSGKIPYSLKRLQNLKLLRLSSNLLTSEIPDSLSQIPSLEEVSLHSNLLSGPIPTNIGNATRLLRLYLYGNQLSGTIPSSIGNCSRLEDLELSFNRLTGEIPVSIWRIPSLVHILVQNNSLFGELPSEMTGLKNLKNISLFDNQFSGVIPQSLGINSSLVKLDCMNNKFTGNIPPNLCFGKQLRELNMGMNQLQGGIPSDVGRCVTLRRLILRENNFTGSLPYFESNPNLRYMDISKNNISGSIPSSLGNGTNLTYINLSMNKFSGLIPSELGRLVNLVILNLAHNNLEGPLPPQLSNCTKMDRFDVGFNFLNGSFPSSLRSWIGITTLVLRENLFTGGIPDFFAEFNNLRELQLGGNLFGGKIPRSLGTLSNLFYGLNLSANGLTGGIPSEIGKLELLQSLDLSLNNLTGSIDVLDGLVSLIEVNIAYNFFNGSVPKNXVKLLNSSPSSFMSNPLLCVSCSSCTKTSYVKPCVYKSTDHNGISKFQIVMIELGSSIFISAMLLITILMHLHRKESKRASPLKQWSFIERGGGRIGFIYEREVKILAENRSSSLQDLVLEATEDLNERYVIGRGAHGIVYKAILGQQVFAVKKVEFGRNKQKRLSNMCKEIKILGMFKHRNLLTYADYWIGEDYGLALYEFMENGSLHDILHEKKPPPPLTWNVRFKIAVGIAQGLAYLHYDCIQPIVHLDIKPRNILLDADMEPIIADFGTALYRKLSEHSYSHSETRQMLSSRVAGTPGYIAPENAYAIVQSRKSDVYSYGVVLLELITRKKVLVPSLNDESKVTNLVSWVRSVWLESGKIENIADSYLASAFANSAALVKQVTAVLLLALQCTERDLRNRPTMDDVIGFYNKALFKWCEEGNYGDEVVANIAPQPYGSSNLFPDVPVVDHHLHGESHRAASQRQREVTFNAETEPEGYSDFSFWQDANQFQPRVYHALDDWKLMSRPATVIDGLIIEVMRNGKIQAEQVLVAALIVPTITFAWPSLVFLPSVTGPVLTKPFNWFFLLHCTQYMHLQTSLYSQLKSYFINVNQGHLVSGHGRIQRSYKAKTLQFLEHGETNDQMQKMTGSLPDYESNLNLRYMDTSKNNISEPTPSSLTSHTIIA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	224980	229451	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007315.1	PF08263.7	LRRNT_2	36	71	6.40E-06
Glyur000135s00007315.1	PF00560.28	LRR_1	124	145	0.026
Glyur000135s00007315.1	PF00560.28	LRR_1	196	217	0.52
Glyur000135s00007315.1	PF12799.2	LRR_4	361	400	2.80E-07
Glyur000135s00007315.1	PF00560.28	LRR_1	410	432	0.49
Glyur000135s00007315.1	PF00069.20	Pkinase	703	919	1.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.317
SRR1783600	control	1.361
SRR1783602	moderate drought stress	0.785
SRR1811619	moderate drought stress	0.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.238
DRR006520	Root Summer glycyrrhizin high producing strain	5.165
DRR006521	Root Winter glycyrrhizin high producing strain	0.187
DRR006522	Root Winter glycyrrhizin high producing strain	0.204
DRR006523	Root Summer glycyrrhizin low producing strain	4.083
DRR006524	Root Summer glycyrrhizin low producing strain	4.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.425

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.594
SRR2868004	Drought Stress (root)	0.868
SRR2967015	Control (root)	1.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.976
SRR9715740	Leaf	1.801
SRR9715741	Leaf	3.401
SRR9715739	Root	0.506
SRR9715742	Root	1.942
SRR9715743	Root	1.842

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.174
SRR8749028	MeJA induced 9h	3.900
SRR8749029	MeJA induced 9h	3.470
SRR8749030	Uninduced	3.096
SRR8749031	Uninduced	0.773
SRR8749032	Uninduced	1.553

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.876
SRR8400027	Control - Root	2.023