Gene detail

Gene detail information of Glyur000135s00007308

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27140.1	4.00E-22	HSP20-like chaperones superfamily protein
NR	XP_004491156.1	5.41E-101	PREDICTED: putative surface protein SACOL0050-like [Cicer arietinum]
Swissprot	tr\|D9UC01\|RTM2D_ARATH	9.00E-12	Inactive protein RESTRICTED TEV MOVEMENT 2
trEMBL	tr\|A0A072UFZ6\|A0A072UFZ6_MEDTR	9.00E-92	Hsp20/alpha crystallin family protein {ECO:0000313\|EMBL:KEH28336.1}

Sequence

Transcript Sequence

>Glyur000135s00007308.1
ATGGCGTTGGATCAAAAGACACGTGAAGCAGATCGTGTGTATGAAGAATTTGAACCACCCATTGATTGGGATCATGATGAAGGGAGATTTAAGAAGGAGCAATTGAGGGTACAAGTAACCTCNACCCGACTGCTAAGGGTGAGTGGTGAAAGACAGATCAGTGAGAACAAATGGCGTAGATTCCGCAAGGAAATGGCAATGCCCTCTCATTCAGACACAAGTGGGATCAGTGCCAAGTTTGAAGCTGGAATGTTATATGTTAGGCTTCCCAAAATGATCATCACCAACAACAACAATAGTAAGCAGCAGCAGCAGCAGCAGAGTCCAACCAACAATGCTCCAACACCAGCAGTACCACCCACCAAGCCAACACAGCCAGCAGCAGCAGCAGCAACAACAACAACACCAACACCAACACCAAAACAAGAAGATCCAAATGAGCCTGAGCCAGCACATCGAGTAGGACCACGTGCTCATGTTGTTAATCAGAGAAAGCCAAGAGTTTTGGGGGACAAATTAGGTGCAGATCAATATTCCAATAAGAGTACTGATGATGAGGGACAAAAGCCAAAACCAGAGGAACCAATTAAGGAATTACATGATGAAAAGCATTCTTCTTCTCAGAAGAAACCAGAACCACCACAGAAGGTTGAGAAGGGAAAAGCAAGAATATTAACTGANGATGATATCAATAAGGGTACTGACAAAGTTGAAGGTGCTGCTGCAATATTAAAGCATGGAAGTGGTGGTGGTTCAGATCAAGATCATGGGAAGGCGTTGGAGAAAAGGTCACCGACTATGGAAATGGTTTCACGACAGAGTCAGGAATACATGAATGCAGTTTCTGGTCTGGTGGAGGAAGTTAAGCGGCAGAAGAAACTGGTCAAAGTGCTGCTACTTAGCCTTTTGGTGTTGCTGTTTGGGGTCTATGAGAGAGTAAAAGAAGGTGTAGCAACAAGGCATGGAAGTGGTGGTTCAGACTCAGATCCAGATCATGGGAGGAAGAGGTTGGAGAAAAGGTCACTCACTATGGAATTGGAAATGGTTTCACGACAGAATGAGGAATACATGAATGCAGTTTCTGATTTGGTGGAAGAGGTTAGGAAGCAAAAGAAACTGATAAGTGAGAATAAATGGCGTAGATTCCGCAAAGAAATGGCAGTGCCACCTGATTCAGACACAAGTGGGATCAGTGCCAAGATTGAAGCCGGAATGATATGTGTTAGGCTTCCCAAAATGATCATCACCAACAACAACAACAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGCAACAGAGTCCAACCAACAATGCTTGTGCTCCAATACCAACACCATCCACCAAGCCAACACAGCCAGCAGCAGCAACAACAGCAACAGTACCAAAACAAGAAGCTCCAAATCCTCACCCCCTGCAACGAATTGCATCATATCTGAAACCAAGTAATCGTCAGAAAATGCCAATAGTAGATGAGTACTTGTACAAAGCTTCAGAACCTGGCATCGACCAACCTTCAGATTTCTCGAATATCAGAAAGAAGCTGCAAAGAGGAAATAACAATAATGATCCAACACCAACAGTACCACCCACCAAACCACCTCAGCCTCAGCAACCAACAACTGATCAGAAAGCTGCTGCAGAACCACCACAGAAGGTTGAGAAGGGAAAAGCAAGAATATTAACAGATGATGATATTGTCAATAAGGAGAGATCAGTAGAAGAAGGTGCTGCTGCAATGTTAAAGNATGGAAGTGGTGGTGGTTCAGATCATGATCATGGGAAGGTATTGGAGAAAAGGTCACTCACTACGGGACAGAGTGAGGAATACATGAATGCAGTTTCTGGTCTGGTGGAGGAAGTTAAGCAGCAGAAGAAACTGACACGTGAGGCAGATCGTGCGTATGAAGAATTTGAACCACCCATTGATTGGGATCATGATGAAGCAAGTGACACGCTAATTCTTACGCTTCCAGACACAAGTAGGATCAGTGCCACGATTGAAGCTGGAATGTTATATGTTAGGCTTCCCAAAATGATCATCACCAACAACAACAATAACAACAATAATAAGCAGCAGCAGCAACAGAGTCCAAACAACAATGCTCCAACACCAAAAGTTCCACCCACCAAGCCGCCACCACAGCCAGCACCAGCACCAACACCAACAGTACCAAAAAAAGAAGCTCCAAATCCTCACCCTCTGCAACGAATTGCATCATATCTGAAACCAAGTAATCGTCAGAAAAAGCCAATAGTAGATGAGTACTTGTACAAAGCTTCAGAATTCGATAAACTACCAGATCCGGGCATCGACAAAAGATCATCATTCTATGTCCAGAATATCCACAAAAGGAAGCTGCAGAGTCCAACCAACAATGCNCCAACACCAAAAGTACCACCCACCAAGCCACCACAGCCGCCACTACCAAAACAAGAAGCTCCAATTAAGCCTCAGCAACCAACAACTGATCATCAGAAAGCTGCTGCAGAACCACCACAGAAGGTTGAGAAGGGAAAAGCAAGAATATTAACAGATGATGACATTGTCAATAANNAGAGATCAGTAGAAGAAGGTGCTGCTGCTGCAATATTAAAGCATGGAAGTNGTGGTGGTGGTTCAGATCATGATCATGGGAAGGTGTTGGAGAAAAGGTCACTCACTATGGAAATGGTTTCACAACAGAGTCAGGAGTACATGAATGCAGTTTCTGGATTGGCAGAAGAGGTTAGGAAGCAAAAAAAACTGGTCAAATTGCAGCTCCTCACCTTTTTGGCAACAATGGCACAATCAGCAGCAGCTAATCGTGTTTACCAAGATTTTGAACCCNTTTTTGAATGGACTGAAGATGAAGCAAGTGCCACGCTCGTTGTAATGCTCCCAGGATTCAAAAAGGAACAGTTTAAGGTGCAAGTGACCTCAACTGGTGTCCTAAGGATAAATGGTGAACGGCAGGTGATTGAGAACACATGGCATCGTTTTGGCAAAGAATTCCCCATCCCTCCACATTGTGACACCAATGAGGTGAGTGCCAAGTTTGAGCTTGGAGTTCTATCAGTTAAGTTTCCCAAACTCATCACCCCTGCACCAACTAAGCCCCAACAACAACAACAACAACATAGTGCTGAGCCTGAGGCACCAACACCAGCACAAGCACAAGTGGTTGATAACAAAGAACCAATTAGTGATGAAAAAGAAAAGAACAGAACAAAAGAAGATGAACAAGTTGATCAACATGAAAAGAAGGTGTCAGAGACAACAACAAAAGTTGAAAGTGAAACCCCTTATAAGCCTCAAGCCAAGATGACACAAAGGTTGAAAACAAGGATTTTGGATTTCAATATCAGTATGAGATCAGGAAATGATGATGATGAAAAGGGTGTTAACAAATTAGGCTTTTGTGGTACTACTGGTGGTGGAAGCACAAGGCTTAAGAGGGGGAAGAAATTGATGAACATGAGACAAAGATACATACATAGGACGCAAAAGCCAAAGAGAAACAAAAGCACAAACAAAGAAACACAAATGGATACCCCAAAGACACAGCCAGCAGCCAATCGTGTCTATGAANACTTTGTACCAGATCATGAATGGTCTAGAGATGAAGGGCGTTTCACTGTTATGCTACCAGGATATAGAAGGGATCAAATGAAGGTTCAAGTGACCTCAAAACCTGCCCTAAGGCTAATGGGTGAACGACCAATCTTTGAGAACAGATGGCGTCGTTTCACTTTAGAATTACCCATTCCTTCTGACTATGACACAGACAATGTGACTGCTACGTTTGAGGGTGGAAGGCTATCTGTCACATTTGCCAAACTGACTAAGCCTAAGGAAACAACAAATCCACCAGAAGAAGAAGCTCCAAAGCCTAAGGAACCATCACAAAGGGTTGATGAGCAAAAGGGTGCTCAAGAAGATACCCCAAAAGCAAAAGAAGACAAAGCAGAAGAAGCAAGGACTAATGAAGTCTCTGATCAAAAGGCACCACAGAAGGAGGAGCCAATTGATGAAACTGAAAAGAGCAAAACAGAAACAGCTGCTAGCAAAGACAAAGGGACTGAGGGAGCCAGGACTAATGGCTCAACCGAGACAACAGAAGCAGCAATCTCTAAAGCTCCTAAAACCAAAAATGCCAAGTCTGTTTCAAGATCCAAAACTAGGCTTATTGATTTCGCTCCAAAACCATTATTTAATTGGGTTGAAAATGAAGCCNTTGGAGACTCGGCCACAGGGCTTAACAAGGGGAAGAAATTGGTCAAATTGGTGGTGCTAATCTTATTGCTTGTGGGACTTGGGCTTTATTATAGTAGAAATGCATTCAGATCATCAAATGGAGAATGGAACTTCCAAGAGCAGGAGCTGTTATTTCCTTACTGAAGTACTCGTATTAGTGAACACAACATTATATTCATTTGTGTGTGAATGCATAAATTCAATAGAAGAATAAAATTATCAGTCAATTGTAATGTAGACATAATCCATATTTCATTTACAATCATC

Protein Sequence

>Glyur000135s00007308.1
MALDQKTREADRVYEEFEPPIDWDHDEGRFKKEQLRVQVTSTRLLRVSGERQISENKWRRFRKEMAMPSHSDTSGISAKFEAGMLYVRLPKMIITNNNNSKQQQQQQSPTNNAPTPAVPPTKPTQPAAAAATTTTPTPTPKQEDPNEPEPAHRVGPRAHVVNQRKPRVLGDKLGADQYSNKSTDDEGQKPKPEEPIKELHDEKHSSSQKKPEPPQKVEKGKARILTXDDINKGTDKVEGAAAILKHGSGGGSDQDHGKALEKRSPTMEMVSRQSQEYMNAVSGLVEEVKRQKKLVKVLLLSLLVLLFGVYERVKEGVATRHGSGGSDSDPDHGRKRLEKRSLTMELEMVSRQNEEYMNAVSDLVEEVRKQKKLISENKWRRFRKEMAVPPDSDTSGISAKIEAGMICVRLPKMIITNNNNNKKKKKKKKKKQQQSPTNNACAPIPTPSTKPTQPAAATTATVPKQEAPNPHPLQRIASYLKPSNRQKMPIVDEYLYKASEPGIDQPSDFSNIRKKLQRGNNNNDPTPTVPPTKPPQPQQPTTDQKAAAEPPQKVEKGKARILTDDDIVNKERSVEEGAAAMLKXGSGGGSDHDHGKVLEKRSLTTGQSEEYMNAVSGLVEEVKQQKKLTREADRAYEEFEPPIDWDHDEASDTLILTLPDTSRISATIEAGMLYVRLPKMIITNNNNNNNNKQQQQQSPNNNAPTPKVPPTKPPPQPAPAPTPTVPKKEAPNPHPLQRIASYLKPSNRQKKPIVDEYLYKASEFDKLPDPGIDKRSSFYVQNIHKRKLQSPTNNAPTPKVPPTKPPQPPLPKQEAPIKPQQPTTDHQKAAAEPPQKVEKGKARILTDDDIVNXXRSVEEGAAAAILKHGSXGGGSDHDHGKVLEKRSLTMEMVSQQSQEYMNAVSGLAEEVRKQKKLVKLQLLTFLATMAQSAAANRVYQDFEPXFEWTEDEASATLVVMLPGFKKEQFKVQVTSTGVLRINGERQVIENTWHRFGKEFPIPPHCDTNEVSAKFELGVLSVKFPKLITPAPTKPQQQQQQHSAEPEAPTPAQAQVVDNKEPISDEKEKNRTKEDEQVDQHEKKVSETTTKVESETPYKPQAKMTQRLKTRILDFNISMRSGNDDDEKGVNKLGFCGTTGGGSTRLKRGKKLMNMRQRYIHRTQKPKRNKSTNKETQMDTPKTQPAANRVYEXFVPDHEWSRDEGRFTVMLPGYRRDQMKVQVTSKPALRLMGERPIFENRWRRFTLELPIPSDYDTDNVTATFEGGRLSVTFAKLTKPKETTNPPEEEAPKPKEPSQRVDEQKGAQEDTPKAKEDKAEEARTNEVSDQKAPQKEEPIDETEKSKTETAASKDKGTEGARTNGSTETTEAAISKAPKTKNAKSVSRSKTRLIDFAPKPLFNWVENEAXGDSATGLNKGKKLVKLVVLILLLVGLGLYYSRNAFRSSNGEWNFQEQELLFPY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	173950	193783	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007308.1	PF00011.16	HSP20	29	97	4.80E-06
Glyur000135s00007308.1	PF00011.16	HSP20	947	1034	3.20E-08
Glyur000135s00007308.2	PF00011.16	HSP20	29	97	4.70E-06
Glyur000135s00007308.2	PF00011.16	HSP20	931	1018	3.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.172
SRR1783600	control	1.297
SRR1783602	moderate drought stress	1.669
SRR1811619	moderate drought stress	1.685

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.572
DRR006520	Root Summer glycyrrhizin high producing strain	5.557
DRR006521	Root Winter glycyrrhizin high producing strain	0.121
DRR006522	Root Winter glycyrrhizin high producing strain	0.207
DRR006523	Root Summer glycyrrhizin low producing strain	9.907
DRR006524	Root Summer glycyrrhizin low producing strain	9.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.040

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.910
SRR2868004	Drought Stress (root)	9.053
SRR2967015	Control (root)	8.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.975
SRR9715740	Leaf	0.407
SRR9715741	Leaf	0.859
SRR9715739	Root	0.456
SRR9715742	Root	2.024
SRR9715743	Root	1.745

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.137
SRR8749028	MeJA induced 9h	0.246
SRR8749029	MeJA induced 9h	0.199
SRR8749030	Uninduced	0.148
SRR8749031	Uninduced	0.249
SRR8749032	Uninduced	0.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.576
SRR8400027	Control - Root	3.181