Gene detail

Gene detail information of Glyur000135s00007300.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55360.1	3.00E-141	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
NR	XP_003545510.1	0	PREDICTED: very-long-chain enoyl-CoA reductase-like isoformX1 [Glycine max]
Swissprot	tr\|Q9M2U2\|ECR_ARATH	7.00E-178	Very-long-chain enoyl-CoA reductase
trEMBL	tr\|I1M7C1\|I1M7C1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G04780.2}

Sequence

Transcript Sequence

>Glyur000135s00007300.1
CAATCTTCCTTTGTGAATTGTGTCTCTGAGGAAACATCAAACACACACAGACACTACACACTCTCTCTCTCTTCCCCCAATTCAGCTCATACTTCTATTGGATCTTGCATATAATTGCATACAATCCTTTAAGTGATTTGCAGAGTGTGTTGCTGACACTGTTTGGCGAAGTGGGTCTGTTTCGGTTTTGAAGATGAAGGTCACTTTGGTTTCTAGGAGTGGAAGAGAAATCGTTAAAGGTGGCATTGAGCTCAATGATTCTGCTACTGTAGCAGATCTGCAGGAGGCAATTCATAGGCGAACCAAGAAGTATCCATCGAGGCAGCGCTTGACACTTCCCGTCCAACCAGGATCAAAGGAAAGGCCCGTTGTTCTTAATTACAAAAAGAGTCTGAAAGACTATACAAGTGGGAATTCAGAAACCTTAACTGTAGTATTCAAGGACTTAGGCCCACAAGTTTCTTATCGTACGCTTTTCTTCTTTGAGTATTTGGGGCCTTTGCTTATCTATCCAGTCTTCTATTATTTGCCTGTTTACGAGTACTTCGGCTACAAGGGCGAACGTGTCATCCACCCTGTGCAGACATATGCCATGTACTATTGGTGTTTCCATTATGCCAAACGAATTCTGGAAACATTTTTCGTGCATCGCTTCAGCCATGCAACCTCACCCCTTTCCAATGTTTTTCGCAACTGTGCTTATTACTGGACCTTTGGCGCTTATATTGCTTATTATGTGAACCATCCACTATATACCCCTGTAAGTGACCTACAGATGAAGATCGGGTTTGGGTTNGGGATACTCTGCCAAGTCTCGAACTTCTATTGCCATCTTATACTGAGTAGTCTTCGTGGTCCTAAGGGAGAAGGTGGATATCAAATCCCACGTGGCTTTCTCTTCAATATCATTACTTGTGCAAATTATACAACAGAGATTTACCAGTGGTTGGGCTTCAACATTGCTACGCAAACCGTTGCCGGTTATATTTTTCTCGTGGTTGCTACTTCTATCATGACCAATTGGGCTTTAGCAAAGCACAGGCGTTTGAAGAAGTCGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00135	122827	127004	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10258	TER, TSC13, CER10	EC:1.3.1.93	Fatty acid metabolism	map01212
			Fatty acid metabolism	map01212
			Fatty acid elongation	map00062
			Fatty acid elongation	map00062
			Biosynthesis of unsaturated fatty acids	map01040
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000135s00007300.1	PF02544.11	Steroid_dh	158	287	1.00E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.260
SRR1783600	control	52.967
SRR1783602	moderate drought stress	46.841
SRR1811619	moderate drought stress	46.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.289
DRR006520	Root Summer glycyrrhizin high producing strain	64.608
DRR006521	Root Winter glycyrrhizin high producing strain	31.217
DRR006522	Root Winter glycyrrhizin high producing strain	30.331
DRR006523	Root Summer glycyrrhizin low producing strain	49.632
DRR006524	Root Summer glycyrrhizin low producing strain	50.899
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.633
SRR2868004	Drought Stress (root)	53.118
SRR2967015	Control (root)	59.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.142
SRR9715740	Leaf	51.164
SRR9715741	Leaf	44.539
SRR9715739	Root	71.359
SRR9715742	Root	39.202
SRR9715743	Root	47.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.477
SRR8749028	MeJA induced 9h	24.448
SRR8749029	MeJA induced 9h	31.150
SRR8749030	Uninduced	20.917
SRR8749031	Uninduced	12.875
SRR8749032	Uninduced	14.780

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.297
SRR8400027	Control - Root	86.265