Gene detail information of Glyur000135s00007297 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21050.1 | 4.00E-91 | |
| NR | KEH34371.1 | 2.40E-166 | hyccin protein [Medicago truncatula] |
| trEMBL | tr|A0A072UY98|A0A072UY98_MEDTR | 9.00E-167 | Hyccin protein {ECO:0000313|EMBL:KEH34371.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00135 | 102869 | 103948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000135s00007297.1 | PF09790.4 | Hyccin | 56 | 241 | 5.40E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.570 |
| SRR1783600 | control | 14.249 |
| SRR1783602 | moderate drought stress | 7.924 |
| SRR1811619 | moderate drought stress | 8.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.972 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.434 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.711 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.656 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.255 |
| SRR2868004 | Drought Stress (root) | 3.368 |
| SRR2967015 | Control (root) | 4.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.947 |
| SRR9715740 | Leaf | 2.293 |
| SRR9715741 | Leaf | 0.796 |
| SRR9715739 | Root | 11.260 |
| SRR9715742 | Root | 8.579 |
| SRR9715743 | Root | 8.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.462 |
| SRR8749028 | MeJA induced 9h | 2.655 |
| SRR8749029 | MeJA induced 9h | 2.543 |
| SRR8749030 | Uninduced | 1.390 |
| SRR8749031 | Uninduced | 0.565 |
| SRR8749032 | Uninduced | 1.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.311 |
| SRR8400027 | Control - Root | 9.868 |