Gene detail information of Glyur000135s00007296.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10950.1 | 8.00E-51 | SGNH hydrolase-type esterase superfamily protein |
| NR | XP_004491171.1 | 0 | PREDICTED: GDSL esterase/lipase At1g71250-like [Cicer arietinum] |
| Swissprot | tr|Q9FVV1|GDL28_ARATH | 3.00E-41 | GDSL esterase/lipase At1g71250 (Precursor) |
| trEMBL | tr|G7K2X1|G7K2X1_MEDTR | 0 | GDSL-like lipase/acylhydrolase {ECO:0000313|EMBL:AET00036.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00135 | 93332 | 100835 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000135s00007296.1 | PF00646.28 | F-box | 92 | 134 | 1.30E-05 |
| Glyur000135s00007296.1 | PF00400.27 | WD40 | 170 | 196 | 0.00032 |
| Glyur000135s00007296.1 | PF00657.17 | Lipase_GDSL | 389 | 627 | 1.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.237 |
| SRR1783600 | control | 3.341 |
| SRR1783602 | moderate drought stress | 3.492 |
| SRR1811619 | moderate drought stress | 3.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.213 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.296 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.760 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.681 |
| SRR2868004 | Drought Stress (root) | 8.666 |
| SRR2967015 | Control (root) | 8.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.757 |
| SRR9715740 | Leaf | 8.333 |
| SRR9715741 | Leaf | 8.481 |
| SRR9715739 | Root | 6.217 |
| SRR9715742 | Root | 7.500 |
| SRR9715743 | Root | 8.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.755 |
| SRR8749028 | MeJA induced 9h | 4.001 |
| SRR8749029 | MeJA induced 9h | 4.932 |
| SRR8749030 | Uninduced | 4.695 |
| SRR8749031 | Uninduced | 4.482 |
| SRR8749032 | Uninduced | 3.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.313 |
| SRR8400027 | Control - Root | 6.879 |