Gene detail information of Glyur000135s00007283 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27080.2 | 6.00E-50 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003519484.1 | 5.02E-145 | PREDICTED: uncharacterized protein LOC100789647 [Glycine max] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 4.00E-22 | Protein YLS9 |
| trEMBL | tr|I1JIQ7|I1JIQ7_SOYBN | 2.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G44200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00135 | 33035 | 33856 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000135s00007283.1 | PF03168.8 | LEA_2 | 145 | 248 | 2.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.936 |
| SRR1783600 | control | 4.787 |
| SRR1783602 | moderate drought stress | 5.816 |
| SRR1811619 | moderate drought stress | 5.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.858 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.875 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.935 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.005 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.721 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.948 |
| SRR2868004 | Drought Stress (root) | 52.767 |
| SRR2967015 | Control (root) | 84.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.128 |
| SRR9715740 | Leaf | 21.446 |
| SRR9715741 | Leaf | 38.410 |
| SRR9715739 | Root | 763.627 |
| SRR9715742 | Root | 243.585 |
| SRR9715743 | Root | 327.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 520.969 |
| SRR8749028 | MeJA induced 9h | 312.521 |
| SRR8749029 | MeJA induced 9h | 521.672 |
| SRR8749030 | Uninduced | 459.492 |
| SRR8749031 | Uninduced | 275.530 |
| SRR8749032 | Uninduced | 543.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.671 |
| SRR8400027 | Control - Root | 55.403 |