Gene detail

Gene detail information of Glyur000134s00009794

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66330.1	8.00E-115	Leucine-rich repeat (LRR) family protein
NR	XP_004512092.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-32	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9M0G7\|PXL2_ARATH	2.00E-36	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor)
trEMBL	tr\|C6ZRZ2\|C6ZRZ2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G07830.1}

Sequence

Transcript Sequence

>Glyur000134s00009794.1
ATGGGGTCTCTCTGTTTCCCTTTCCTTCTATTTTCAATCATCGCAGCTTCGGGATTGTTTCTGGTTACAGAGTCAAAGACACATTGGGGAGACACAGAGGTTCTGAAGGCGCTGAAGCAAGGTTTGGACCCAGGTTCGGTGAACCCGGGATCATGCGTGAGTTCATGGGACTTCACAGTCGACCCATGCGACAACCTCTTCGGGGAGAAATTCACGTGCGGGTTCAGATGCGACGTCGCCGTTTCGGGGCTGAGTCGAGTCACCGAACTCAGCCTCGATCAAGCGGGTTACGCCGGGTCCCTCAACTCCTTCACTTGGAACCTTCCTTATCTTGAAACCCTCGACGTCTCCAACAACTACTTCTCTGGCCACATCCCCGATTCCTTCTCGAACCTAACTCGCCTGCGTCGACTCGGTNTGTCGTCCAACTCGTTCTCCGGCGAGATACCCTCTTCCATTGGGTCCCTCTCAAGCCTCGAAGAGTTATACCTCGACAACAACAACAACCTTCAGGGATCAATCCCTTCCATTTTCAACAACCTTGCGAGCTTGCAAAGGCTCGAGCTTCAAAACAACAAGCTAAACGGTCAAATCCCAAATTTGAGTTCCCTCAGAAGCCTTTACTACCTTGACCTCAGTTTCAACGCCGTCAGCGGAGAATTGCCGGCGTCACTTCCCGTTTCCTTGGTTCAAATTTCGATAAGGAACAACAACTTAACCGGAGCATTAACCCCTGAAAGCTTCAAGGACTTGATGTTTTTGCAAGTTTTGGATTTGAGTTCCAACGAATTAACTGGCTCTGTTCCTTCTGTTCTGTTTGAGCTTCCTTCGCTGCAGCAATTGACCCTTTCTTCCAACGAACTCTCCTCNATCCAAGTTCCCTCTTATGGGTTTGAATCCCGAAGCGGGCTCATAGCGGTTGATCTGAGCAACAACCAGATTGAAGGGGTTTTACCGTCGTTCATGGCGGTGATGAGAAAGCTTTCGTCTTTGTCTCTGGAGAACAACCGGCTCACCGGTTTGATACCGGCCCAGTACGCGCTGAAGACGGTTTTTCCAGAAACCGGGATTGCCCCATTCGGGAGGCTACTGTTGGGGGGGAATTACTTGTTCGGAGGGATACCTCGCCCTCTACTGGTTCTGAAACCTGATTCTGCGAACGTGAGCCTTGTTGACAATTGCTTGTATAGGTGCCCTCATGTTTTCTTTTTCTGCCAGGGTGGACAACAGAAATCATTGGCAGAGTGTAATAAGAGAATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00134	312212	313474	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000134s00009794.1	PF00560.28	LRR_1	111	132	0.0023
Glyur000134s00009794.1	PF13855.1	LRR_8	157	215	1.60E-08
Glyur000134s00009794.1	PF13855.1	LRR_8	229	288	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.564
SRR1783600	control	11.246
SRR1783602	moderate drought stress	11.663
SRR1811619	moderate drought stress	11.632

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.045
DRR006520	Root Summer glycyrrhizin high producing strain	12.295
DRR006521	Root Winter glycyrrhizin high producing strain	1.765
DRR006522	Root Winter glycyrrhizin high producing strain	1.547
DRR006523	Root Summer glycyrrhizin low producing strain	9.324
DRR006524	Root Summer glycyrrhizin low producing strain	8.979
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.935
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.830
SRR2868004	Drought Stress (root)	21.427
SRR2967015	Control (root)	26.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.883
SRR9715740	Leaf	4.445
SRR9715741	Leaf	4.359
SRR9715739	Root	11.062
SRR9715742	Root	14.964
SRR9715743	Root	12.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.051
SRR8749028	MeJA induced 9h	1.947
SRR8749029	MeJA induced 9h	2.094
SRR8749030	Uninduced	0.582
SRR8749031	Uninduced	0.310
SRR8749032	Uninduced	0.310

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.225
SRR8400027	Control - Root	18.795